Manihot esculenta (cassava): 6000006
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Entry
6000006 CDS
T05761
Symbol
rpoB, MaesCp013
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6000006 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
6000006 (rpoB)
03400 DNA repair and recombination proteins [BR:
mesc03400
]
6000006 (rpoB)
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
6000006 (rpoB)
Transcription machinery [BR:
mesc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
6000006 (rpoB)
DNA repair and recombination proteins [BR:
mesc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
6000006 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
6000006
NCBI-ProteinID:
YP_001718429
UniProt:
B1NWE2
LinkDB
All DBs
Position
Pltd:complement(24616..27828)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLGDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKEKDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIGNIPLMNSLGTFIINGIYR
IVINQILQSPGIYYRSELEHNGISVYTGTIISDWGGRVELEIDRKARIWARVSRKQKISI
LVLSSAMGLNLKEILENVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFTCVGGDPIFS
ESLCKELQKKFFQQRCELGKIGRLNMNRKLNLDIPHNNTFLLPRDILAAADRLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHAKIGYWGSLESPFYEISEGSKKVRMFYLSPNREEYYMVA
AGNSLALNRGVQEEQVAPARYRQEFLTIAWERVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKIIYTDIDKIILSGN
GDTLRIPLVRYQRSNKNTCMHQKTQLRRGKCIKKGQVLADGAATVGGELALGKNVLVAYM
PWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNL
DKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAVLGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKKGGSCYNPERICVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVSHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQITRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatggaaatgagggaatgtctacaatacctggatttaatcagatacaattt
gaaggattttgtagattcattgatcagggcttaacagaagaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattagta
gaacccttgataaaagaaaaagatgctgtatatgaatcacttacatattcttctgaatta
tatgtatccgcaggattaatttggaaaaccagtagggatatgcaagaacaaacaattttt
attggaaacattcctctaatgaattccctgggaacttttataataaatggaatatacaga
attgtgatcaatcaaatattgcagagtccgggtatctattaccggtcagagttggaacat
aatggaatttcggtctataccggcaccataatatcagattggggggggagagtagaatta
gagattgatagaaaagcaaggatatgggctcgtgtgagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggtttgaatctaaaagaaattttagagaatgtgtgctac
cctgaaattttcttatctttcctgaatgataaggaaaaaaaaaaaattgggtcaaaggaa
aatgccattttggagttttatcaacaatttacttgtgtaggcggagatccaatattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaaag
attggtcgattaaatatgaaccggaaactgaatcttgatataccccataacaatacattt
ttgttaccacgagatatattggcagctgcggatcgtttgattggaatgaaatttggaatg
ggtacacttgacgatatgaatcatttaaaaaataaacgtattcgttctgtagcggatctc
ttacaagatcaattcggattggctctgattcgtttagaaaatgtagttcgagggactata
tgtggagcaattaggcataaattgataccgacccctcaaaatttggtaacttcaactcca
ttaacaaccacttatgaatcttttttcggattacacccattatctcaagttttggatcga
actaatccattgacacaaatagttcatgggagaaaattgagttatttgggtcctggagga
ttaacaggacgaactgctagttttcggatacgagatatccaccctagtcattatgggcgc
atttgcccaattgacacgtctgaaggaatcaatgttggacttattggatctttagcaatt
catgccaagattggttattgggggtctttagaaagcccattttatgaaatctctgaggga
tcaaaaaaagtacggatgttttatttatcgccaaatagagaggaatactatatggtagcg
gcaggaaattctttggcgctgaatcgaggtgttcaggaagaacaggttgctccggctcga
tatcgtcaagaattcctgactattgcatgggaacgggtgcatcttcgaagtatttttccc
ttccaatatttttctattggagcttccctcattccttttatcgagcataatgatgcgaat
cgggctttaatgagttctaatatgcaacgtcaagcagttccactttctcggtccgaaaaa
tgcattgttggaactggattggaacgccaagtggctctagattcaggggttcctgctata
gccgaacacgagggaaagataatttatactgatattgacaagatcattttatcaggtaat
ggggatactctacgcattccattagttaggtatcaacgttccaacaaaaatacttgtatg
catcaaaaaacccagcttcggcggggtaaatgcattaaaaagggacaagttttagcggat
ggtgccgctacagttggtggcgaacttgccttgggcaaaaacgtattagtcgcttatatg
ccatgggaaggttacaattttgaggatgcggtactcattagcgagcgtctggtatatgaa
gatatttatacttcttttcacatacggaaatatgaaattcagactcatgtgacaagccaa
ggacctgaaaggatcactaacgaaataccgcatctagaggcccatttactccgaaattta
gacaaaaacggaattgtgatgctaggatcttgggtagagacgggcgatattttagtaggt
aaattaacgcctcaaatggcgaaagaatcatcgtatgctccggaagatagattattaaga
gccgtacttggtattcaggtatctacttcaaaagaaacttgtctaaaactacctataggt
ggtaggggtcgagttattgatgtgagatggatccagaaaaaggggggttcctgttataat
ccggaaaggatttgtgtatatattttacagaaacgtgaaatcaaagtgggtgataaagta
gctggaagacatggaaataaaggcatcatttccaaaattttgcctagacaagatatgcct
tatttgcaagatggaagacctgttgatatggtcttcaacccattaggagtaccttcacga
atgaatgtaggacagatatttgaatgctcactcgggttagcgggaggtctgctagataga
cattatcgaatagcaccctttgatgagagatatgaacaagaggcttcgagaaaactagtg
ttttctgaattatatgaagccagtaagcaaacagcaaatccgtgggtatttgaacccgag
tatccgggaaaaagtagaatatttgatggaagaacgggggatccttttgaacagcctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacatgga
cgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggccaagcaa
gggggacaacgggtcggagaaatggaggtttgggctctagaggggtttggtgtttctcat
attttacaagaaatgctgacttataaatctgatcatattagagctcgccaagaagtgctt
ggtactacgatcattggaggaacaatacctaaacctgaagatgctcccgaatcttttcga
ttgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgag
aagaacttccagattactaggaaggaagcttaa
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