KEGG   Aquibium oceanicum: BSQ44_12410
Entry
BSQ44_12410       CDS       T04603                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
meso  Aquibium oceanicum
Pathway
meso03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:meso00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSQ44_12410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:meso03019]
    BSQ44_12410
   03016 Transfer RNA biogenesis [BR:meso03016]
    BSQ44_12410
Enzymes [BR:meso01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BSQ44_12410
Messenger RNA biogenesis [BR:meso03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BSQ44_12410
Transfer RNA biogenesis [BR:meso03016]
 Prokaryotic type
  tRNA degradation factors
   BSQ44_12410
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: APH72073
UniProt: A0A1L3SRM4
LinkDB
Position
complement(2517992..2520316)
AA seq 774 aa
MARRIPGSRSKRAPGASADGAGGDKPDYRPSREDILKFVAENPDRASKRDIAKAFSLRGD
DRIWLKAVLRDLQAEGVLEKRSRKLHKPGALPHVTVLDVFGRDEDGGLLARPSEEREGFE
SEIVAIRPTMPGKGPTPGVGDRVLARIFPADEAQGPDYTGQIIKVFDKRRETALGVIRRL
PDGSHRAEPVERRQPEMLVEGEFLNDAQPGDLVELEPMRPTRYGLPRGKVTSIIGSLSSE
KAVSMIAIHAHDIPHVFPRDVIEEAEQATPASMEGREDWRAVPLVTIDPADAKDHDDAVH
AVPDEDEKNPGGVIVTVAIADVAAYVRPGSALDREALKRGNSVYFPDRVVPMLPEHISND
LCSLREGQDRPALAVRMTFAADGRKLRHSFHRVMMKSAARLSYPQAQAAIDGAADDKTGP
ILEGTLRPLWEAYAVLSRGRQHRGPLELDLPERKLQLKPDGTVDRVVVPERLDAHRLIEE
FMIQANVAAAETLEAKKQPLIYRIHDAPSLSKQESLREFLQTVDLSLARGPQLRPSQFNA
LLEKVKGEENELLINEVVLRSQSQAEYSPGNIGHFGLNLRRYAHFTSPIRRYADLVVHRA
LIAALGLGKDGLTPGEEARLEDTSALISASERRAMAAERDTVDRLIADHLASRKGEQFEA
RVGGVTKAGLFVRLPQFGADGFIPVSSLGNDYYIYDESAHSLVGERGGKGYRLGDAVEVR
LVEIAPLAGSMRFEMLSEPRPLPPATRSFHKAKRRDRRLSSKAPRRAGVRQRRK
NT seq 2325 nt   +upstreamnt  +downstreamnt
ttggccagacgcatcccaggcagcaggtcgaagcgcgctcccggcgcctcggcggatggc
gcgggaggcgacaagccagactaccggccgtcgcgcgaggacatcctcaaattcgtcgcc
gagaacccggaccgcgcctcgaaacgcgatatcgccaaggcattctcgttgcgcggcgac
gaccgcatctggctgaaagccgtcctgcgcgacctccaggccgagggcgtgctggaaaag
cgttccaggaagctgcacaagccgggcgccctgccccacgtcacggtgctcgacgtcttc
ggccgcgacgaggacggcgggctgctcgcgcgcccgtcggaggagcgcgagggtttcgag
agcgagatcgtcgcgatccgtccgaccatgcccgggaaagggcctactccgggcgtcggg
gaccgcgtgctggcccgcatctttcccgcggacgaagcgcagggaccggactacaccggg
cagatcatcaaggtcttcgacaagcgccgcgagacagcactcggcgtcatccggcgcctt
cccgacggcagccatcgcgccgaaccggtggagcgccgccagccggagatgctggtcgaa
ggcgagttcctgaacgacgcccagccgggcgacctcgtcgaactcgagcccatgcgaccg
acgcgctacggcctgccgcgcggcaaggtgacgtcgatcatcggttcgctgtcgagcgag
aaggcggtctccatgatcgccatccacgcccacgatatcccgcacgtcttcccgcgcgat
gtgatcgaggaggccgaacaggctactcccgcctcaatggagggccgggaggattggcgc
gccgtcccgctcgtcacgatcgatccggccgacgcaaaggaccacgacgacgccgtccac
gccgttcccgacgaggacgagaagaaccccggcggtgtcattgtgaccgtcgccatcgcc
gacgttgcggcatacgtgcggcctggctccgcgctcgaccgcgaggcgctgaagcgcggc
aattcggtctattttccagatcgcgtcgtgccgatgcttcccgagcacatctccaacgat
ctttgctcgctccgtgagggtcaggaccgccccgcccttgccgtgcgcatgaccttcgcc
gccgacggacgcaagctgcggcactcctttcatcgcgtgatgatgaaatccgccgcccgg
ctctcctatccgcaggcgcaggctgcgatcgatggcgcggcggatgacaagactgggccg
atcctcgaaggcacgctgcggccgctctgggaggcctatgccgtgctgtcgcgcggtcgt
cagcatcgcggtcccctcgaactcgacctccccgagcgcaaactccagctgaagccggac
ggaacggtcgaccgcgtcgtcgtgccggagcgcctcgacgcgcaccgattgatcgaagag
ttcatgatccaggcaaacgtggctgccgccgagacgctggaggcgaagaagcagccgctg
atctaccgcatccacgacgcgccatcgctttccaagcaggaatcgctacgcgaattcctc
cagaccgtcgacctgtcgctcgcgcgtgggccgcagctgcgcccctcccagttcaacgct
ctgctcgaaaaggtaaagggcgaggaaaacgagttgctgatcaacgaggttgtcctgcgc
tcgcagagccaggcggagtactcgcccgggaacatcggccacttcgggctcaacctgcgg
cgttacgctcacttcacatcgccgattcgccgttatgccgacctcgtcgttcaccgtgcc
ctgattgcagcgctcgggctgggcaaggacgggctgacgccgggcgaggaagcgcggctg
gaagacacctcggcactcatctccgcatcggagcggcgcgccatggcggcggagcgcgac
accgtcgaccggttgatcgccgaccacctcgcctcgcgcaagggcgagcagttcgaggcc
cgcgtcggaggcgtcaccaaggcggggctcttcgtcagattgccgcagttcggcgcggac
ggcttcataccggtgtcatcgctcggcaatgattactatatctacgacgaatcggcgcat
tcgctggtcggcgagaggggcggaaaaggttaccggctcggcgacgcggtagaggtccgg
ctggtggagatcgctccgctggcgggttcgatgcggttcgagatgttgagcgagccacgg
cccttgccgccggccacccgttccttccacaaggcgaagcggcgggaccggcggctttcg
tcgaaggcaccgcggcgggcaggcgtccgccagaggagaaaatga

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