Aquibium oceanicum: BSQ44_12410
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Entry
BSQ44_12410 CDS
T04603
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
meso
Aquibium oceanicum
Pathway
meso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ44_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meso03019
]
BSQ44_12410
03016 Transfer RNA biogenesis [BR:
meso03016
]
BSQ44_12410
Enzymes [BR:
meso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSQ44_12410
Messenger RNA biogenesis [BR:
meso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ44_12410
Transfer RNA biogenesis [BR:
meso03016
]
Prokaryotic type
tRNA degradation factors
BSQ44_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
APH72073
UniProt:
A0A1L3SRM4
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All DBs
Position
complement(2517992..2520316)
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AA seq
774 aa
AA seq
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MARRIPGSRSKRAPGASADGAGGDKPDYRPSREDILKFVAENPDRASKRDIAKAFSLRGD
DRIWLKAVLRDLQAEGVLEKRSRKLHKPGALPHVTVLDVFGRDEDGGLLARPSEEREGFE
SEIVAIRPTMPGKGPTPGVGDRVLARIFPADEAQGPDYTGQIIKVFDKRRETALGVIRRL
PDGSHRAEPVERRQPEMLVEGEFLNDAQPGDLVELEPMRPTRYGLPRGKVTSIIGSLSSE
KAVSMIAIHAHDIPHVFPRDVIEEAEQATPASMEGREDWRAVPLVTIDPADAKDHDDAVH
AVPDEDEKNPGGVIVTVAIADVAAYVRPGSALDREALKRGNSVYFPDRVVPMLPEHISND
LCSLREGQDRPALAVRMTFAADGRKLRHSFHRVMMKSAARLSYPQAQAAIDGAADDKTGP
ILEGTLRPLWEAYAVLSRGRQHRGPLELDLPERKLQLKPDGTVDRVVVPERLDAHRLIEE
FMIQANVAAAETLEAKKQPLIYRIHDAPSLSKQESLREFLQTVDLSLARGPQLRPSQFNA
LLEKVKGEENELLINEVVLRSQSQAEYSPGNIGHFGLNLRRYAHFTSPIRRYADLVVHRA
LIAALGLGKDGLTPGEEARLEDTSALISASERRAMAAERDTVDRLIADHLASRKGEQFEA
RVGGVTKAGLFVRLPQFGADGFIPVSSLGNDYYIYDESAHSLVGERGGKGYRLGDAVEVR
LVEIAPLAGSMRFEMLSEPRPLPPATRSFHKAKRRDRRLSSKAPRRAGVRQRRK
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
ttggccagacgcatcccaggcagcaggtcgaagcgcgctcccggcgcctcggcggatggc
gcgggaggcgacaagccagactaccggccgtcgcgcgaggacatcctcaaattcgtcgcc
gagaacccggaccgcgcctcgaaacgcgatatcgccaaggcattctcgttgcgcggcgac
gaccgcatctggctgaaagccgtcctgcgcgacctccaggccgagggcgtgctggaaaag
cgttccaggaagctgcacaagccgggcgccctgccccacgtcacggtgctcgacgtcttc
ggccgcgacgaggacggcgggctgctcgcgcgcccgtcggaggagcgcgagggtttcgag
agcgagatcgtcgcgatccgtccgaccatgcccgggaaagggcctactccgggcgtcggg
gaccgcgtgctggcccgcatctttcccgcggacgaagcgcagggaccggactacaccggg
cagatcatcaaggtcttcgacaagcgccgcgagacagcactcggcgtcatccggcgcctt
cccgacggcagccatcgcgccgaaccggtggagcgccgccagccggagatgctggtcgaa
ggcgagttcctgaacgacgcccagccgggcgacctcgtcgaactcgagcccatgcgaccg
acgcgctacggcctgccgcgcggcaaggtgacgtcgatcatcggttcgctgtcgagcgag
aaggcggtctccatgatcgccatccacgcccacgatatcccgcacgtcttcccgcgcgat
gtgatcgaggaggccgaacaggctactcccgcctcaatggagggccgggaggattggcgc
gccgtcccgctcgtcacgatcgatccggccgacgcaaaggaccacgacgacgccgtccac
gccgttcccgacgaggacgagaagaaccccggcggtgtcattgtgaccgtcgccatcgcc
gacgttgcggcatacgtgcggcctggctccgcgctcgaccgcgaggcgctgaagcgcggc
aattcggtctattttccagatcgcgtcgtgccgatgcttcccgagcacatctccaacgat
ctttgctcgctccgtgagggtcaggaccgccccgcccttgccgtgcgcatgaccttcgcc
gccgacggacgcaagctgcggcactcctttcatcgcgtgatgatgaaatccgccgcccgg
ctctcctatccgcaggcgcaggctgcgatcgatggcgcggcggatgacaagactgggccg
atcctcgaaggcacgctgcggccgctctgggaggcctatgccgtgctgtcgcgcggtcgt
cagcatcgcggtcccctcgaactcgacctccccgagcgcaaactccagctgaagccggac
ggaacggtcgaccgcgtcgtcgtgccggagcgcctcgacgcgcaccgattgatcgaagag
ttcatgatccaggcaaacgtggctgccgccgagacgctggaggcgaagaagcagccgctg
atctaccgcatccacgacgcgccatcgctttccaagcaggaatcgctacgcgaattcctc
cagaccgtcgacctgtcgctcgcgcgtgggccgcagctgcgcccctcccagttcaacgct
ctgctcgaaaaggtaaagggcgaggaaaacgagttgctgatcaacgaggttgtcctgcgc
tcgcagagccaggcggagtactcgcccgggaacatcggccacttcgggctcaacctgcgg
cgttacgctcacttcacatcgccgattcgccgttatgccgacctcgtcgttcaccgtgcc
ctgattgcagcgctcgggctgggcaaggacgggctgacgccgggcgaggaagcgcggctg
gaagacacctcggcactcatctccgcatcggagcggcgcgccatggcggcggagcgcgac
accgtcgaccggttgatcgccgaccacctcgcctcgcgcaagggcgagcagttcgaggcc
cgcgtcggaggcgtcaccaaggcggggctcttcgtcagattgccgcagttcggcgcggac
ggcttcataccggtgtcatcgctcggcaatgattactatatctacgacgaatcggcgcat
tcgctggtcggcgagaggggcggaaaaggttaccggctcggcgacgcggtagaggtccgg
ctggtggagatcgctccgctggcgggttcgatgcggttcgagatgttgagcgagccacgg
cccttgccgccggccacccgttccttccacaaggcgaagcggcgggaccggcggctttcg
tcgaaggcaccgcggcgggcaggcgtccgccagaggagaaaatga
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