Aquibium oceanicum: BSQ44_16630
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Entry
BSQ44_16630 CDS
T04603
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
meso
Aquibium oceanicum
Pathway
meso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ44_16630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meso03019
]
BSQ44_16630
03009 Ribosome biogenesis [BR:
meso03009
]
BSQ44_16630
Messenger RNA biogenesis [BR:
meso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSQ44_16630
Ribosome biogenesis [BR:
meso03009
]
Prokaryotic type
rRNA helicases
BSQ44_16630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APH72808
UniProt:
A0A1L3STT7
LinkDB
All DBs
Position
3399320..3401332
Genome browser
AA seq
670 aa
AA seq
DB search
MSDFEGVLPTLAAALQERGYTTLTPVQEAMLSPDLKDADALVSARTGSGKTVAFGLALAP
TLLGEEAAFGNPGAPLGLVIAPTRELAMQVKRELEWLYAGAGAQIASCVGGMDMRSERRT
LERGAHIVVGTPGRLRDHITRHALDLSELRAAVLDEADEMLDLGFREDLEFILQAAPEER
RTLMFSATVSKPIATLAENYQRNAIRIATEGAREQHADIEYRVHPVATHDRDNAIVNVLR
FHEARNALVFCNTRAAVNHLTARLNNRGFPVVALSGELSQSERTHALQAMRDGRAKVCIA
TDVAARGIDLPHLDLVVHADLPTNPDTLLHRSGRTGRAGRKGVSALIVPLPARRRIERTL
MSANITPVWVAAPNADDVAARDEERLLADSALVEPTNEDEAQAVEKLLAQHSAGQVATAF
LRLWRAGRSAPEDLSEVPVDPKARVRRDRDEPSFGEAPRPRDRDIGPTVWFSLSVGRRRN
AEPRWLIPLMCRTGAITKAEIGAIRMQPEETFVEIAASHADALMQAAGPKGMLQNDISLT
RLDGMPDLSPRKAWGKGDRQDRPPRSDDRPRRERGDWKERPARDDRPARTGARDEAAPRP
DWKKQKERPARTDRTDRPAAPANREDAPPARADEGTPLRKKPKKKAFKDKGKPDFARKAE
KRAKRQKTDG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttcgaaggcgtcctcccgacgctcgccgccgcgttgcaggaacgcggctac
acaacgctcaccccggtgcaggaagccatgctttcgcccgacctgaaggacgccgacgcg
ctggtatcggcccgcacgggctccggcaagaccgtcgccttcgggctggcgctggcgccg
acgctgctgggcgaggaggctgccttcggcaaccccggcgcgccgctcggcctggtgatc
gcgccgacgcgcgaactcgccatgcaggtcaagcgcgagctcgaatggctctatgccggg
gcgggcgcgcagatcgcgtcctgcgtcggcggcatggacatgcgctcggagcgccgcacg
ctggaacgcggcgcccacatcgtggtgggcacgccgggccgcctgcgcgaccacatcacg
cgccacgcgctggacctttccgaactgcgcgcggcggtgctggacgaggccgacgagatg
ctcgacctcggcttccgcgaggacctcgaattcatcttgcaggccgcacccgaggagcgg
cgcactctgatgttctcggcgaccgtctcgaagccgatcgccacgctggcggagaactac
cagcggaacgcgatccgcatcgccaccgagggtgcgcgcgagcagcatgccgacatcgag
taccgggtgcatcccgtggcgacgcacgaccgcgacaatgccatcgtcaacgtgctgcgc
ttccacgaggcacgcaacgcgctggtgttctgcaacacccgcgcggcggtgaaccatctc
acggcgcggctcaacaaccgcggcttcccggtggtggcgctgtcgggggaactgagccag
agcgagcgcacccacgcgctgcaggccatgcgcgacgggcgcgccaaggtctgcatcgcc
accgacgtcgccgcgcgcggcatcgacctgccgcatctggacctggtcgtgcatgccgac
ctgccgacgaaccccgacacgctgctgcatcgttcggggcgcaccggacgggccgggcgc
aagggcgtctcggcgctgatcgtgcccctgccggcgcgccggcgcatcgagcgcacgctg
atgtcggccaatatcacacccgtctgggtcgcggcgcccaacgccgacgacgtcgccgcg
cgcgacgaggaacggcttctggccgactcggcgctggtcgaaccgacgaacgaggacgag
gcacaggcggtggaaaaactgctcgcgcagcattcggccggccaggtcgccaccgccttc
ctgcggctgtggcgcgccgggcgctcggcgcccgaggacctgagcgaggttccggtcgac
ccgaaggcgcgcgtgcggcgcgatcgcgacgaaccgtccttcggcgaagcgccgcgtccg
cgcgaccgcgacatcgggccgacggtgtggttctcgctgtcggtcggacgccgccgcaac
gccgagccgcgctggctgatcccgctgatgtgccgcaccggcgcgatcaccaaggccgag
atcggcgcgatccgcatgcagccggaagagaccttcgtcgagatcgccgcgagccacgcc
gacgcgctgatgcaggcggcgggaccgaaaggcatgctgcagaacgacataagcctgacc
cggctcgacggcatgccggacctgtcgccgcgcaaggcgtggggcaagggcgaccggcag
gaccggccgccgaggagcgacgatcgcccgcgccgcgagcgcggcgactggaaggagagg
ccggcacgcgacgaccggccggcgagaacgggcgcacgcgacgaggcggccccgcgaccc
gactggaagaagcagaaggagcgccctgcccgcacggatcgaaccgaccggcccgcggct
ccggcgaaccgcgaggacgcgccgccggcgcgcgccgacgaggggacgccgttgcgcaag
aagccgaagaagaaggcgttcaaggacaagggcaagcccgatttcgcgcgcaaggccgag
aagagggcgaagcgccagaagaccgacggctga
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