Methylobacterium sp. DM1: C0214_22125
Help
Entry
C0214_22125 CDS
T05461
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0214_22125 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metd03021
]
C0214_22125 (rpoB)
03400 DNA repair and recombination proteins [BR:
metd03400
]
C0214_22125 (rpoB)
Enzymes [BR:
metd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0214_22125 (rpoB)
Transcription machinery [BR:
metd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0214_22125 (rpoB)
DNA repair and recombination proteins [BR:
metd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0214_22125 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AWI90681
LinkDB
All DBs
Position
4656387..4660517
Genome browser
AA seq
1376 aa
AA seq
DB search
MANTLVGRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFKSV
FPISDFASTALLEFVRYTFEQPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAKSV
KDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPVTSLLFALGLDGEEILSTFYNRVAYERDG
ADWRVPFDAERLKGFKASVDLIDADSGEVVLEAGKKLNARNARLIGEKGTKFLKATDEDL
VGQYIAEDLVNAKTGEIWAEAGDEISEKLLKALDDVGVTEIPVLDIDHVNVGPYIRNTLA
VDKNSGREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDAERYDLSAVGRVKMNMRLDLD
AADTVRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVKDGVVTDEVAYLSAMEEAKYYVAQANAGMDEGRKLTDDLVVCRRAGEVIVVAPDRVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDS
GAAIAARRSGIVDQVDATRIVIRATEETDPTKPGVDIYRLQKFQRSNQSTCITQKPLVRV
GEPVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQTILDRNTYARLAEVLIGQSPIAGPKGFRKDTTLTREGISEYPRSQWWQF
AVVDDRLMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGRKVAKAVDAYLKNQDIAPLRTEMEAIYSPSELEGLSDEDLAEAGNNVRRGVPMAT
PVFNGAKEADIETMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTNSKQQQAANDQIEPPADAAE
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggccaatacgctggtcggtcgcaagcgcattcgcaagttcttcgggaagatccgggaa
gtcgccgagatgccgaacctcatcgaggttcaaaaggcgtcctacgaccagttcctgatg
gtggacgagccggaaggcggacgcgccgatgagggcctgcagagcgtcttcaagtcggtc
ttcccgatctccgacttcgcctcgacggcactcctcgaattcgtgcgctacaccttcgag
cagccgaaatacgacgtcgacgagtgccgccagcgcggcatcaccttcgcggccccgctc
aaggtgacgctgcgcctgatcgtgttcgatgtggacccggataccggcgccaagtcggtc
aaggacatcaaggagcaggatgtctacatgggcgacatgccgctcatgacggataacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacccactcctccggcaagctgctgtttgccgcg
cgcatcatcccgtatcgcggctcctggctcgacgtcgagttcgatgccaaggacatcgtg
cacgtgcgcatcgaccgcaagcgcaagctgccggtcacctcgctgctgttcgcgctcggc
ctcgacggcgaagagatcctctcgaccttctacaaccgcgtcgcctacgagcgcgacggg
gcggactggcgcgtgccgttcgacgccgagcgtctgaagggcttcaaggcgtccgtcgac
ctcatcgacgccgattccggcgaggtggtgctggaggccggcaagaagctcaacgcccgc
aatgcccgcctgatcggcgagaagggcaccaagttcctcaaggcgaccgacgaggatctc
gtcggccagtacatcgccgaggatctggtcaacgcgaagaccggtgagatctgggccgag
gccggcgacgagatctccgagaagctcttgaaggcgctcgacgatgtcggcgtcaccgag
atcccggtgctcgacatcgaccacgtcaatgtcggcccctacatccgcaacaccctggcc
gtggacaagaattccggccgcgagggcgcgctgttcgacatctaccgcgtcatgcgtccc
ggcgagccgccgacgctcgacaccgcggaggcgatgttccactcgctgttcttcgacgcc
gagcgctacgacctctccgccgtcggccgcgtgaagatgaacatgcgcctcgacctcgat
gccgccgacaccgtgcgcacgctgcgccgcgaggacatgctcgcggtggtcaaggcgctg
gtggacctgcgcgacggcaagggcgagatcgacgacatcgaccacctcggcaaccgccgc
gtccgctcggtcggcgagctgatggagaaccagtaccgtctgggcctcctgcggatggag
cgcgccatcaaggagcgcatgtcctcggtcgatatcgacacggtgatgccgcaggatctc
atcaacgcgaagcccgccgccgcggcggtgcgcgagttcttcggctcgtcgcagctctcg
cagttcatggaccagaccaacccgctgtcggaagtgacgcacaagcgccgcctctcggcg
cttggcccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acgcactatggccgcatctgcccgatcgagaccccggaaggcccgaatatcggcctcatc
aactcgctggcgacgtttgcccgcgtgaacaagtacggcttcatcgagaccccgttccgc
cgggtgaaggacggcgtggtgaccgacgaggtcgcctacctctccgccatggaggaggcg
aagtactacgtcgcccaggccaatgccggcatggacgagggtcgcaagctgacggacgac
ctcgtggtgtgccgccgcgcgggtgaagtcatcgtggtcgcccccgaccgcgtcgatctc
atggacgtgtcgcccaagcagctcgtctcggtcgccgcggcgctgatcccgttcctcgag
aacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcggtgccgctg
gttcgcgccgacgcgcccttcgtcggcaccggcatggaggccgtggtcgcccgcgactcc
ggtgccgccatcgcggcgcggcgctccggcatcgtcgatcaggtggacgccacccgtatc
gtcatccgtgcgacggaggagaccgacccgaccaagcccggcgtcgacatctaccgcctc
cagaaattccagcgctcgaaccagtcgacctgcatcacgcagaagccgctggtgcgcgtc
ggcgagccggtcaagaagggcgaaatcatcgccgacggaccgtccaccgagttcggcgag
ctcgctctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgatcctgctctccgagcggatcgtgaaggatgacgtgttcacctcgatccacatc
gaggagttcgaggtgatggcccgcgacaccaagctgggtccggaggaaatcacccgcgac
atcccgaacgtctcggaagaggcgctcaagaaccttgacgaggccggcatcgtctatatc
ggcgccgaggtccacgccggtgacatcctcgtcggcaagatcacgccgaagggcgagagc
ccgatgacgccggaggagaagctgctccgcgccatcttcggcgagaaggcgtccgacgtg
cgcgacacctcgctccgggttcccccgggcgtgaccggcacgatcgtcgaggtccgggtg
ttcaaccgccacggcgtcgacaaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcgtctcgccaaggaccgcgacgacgagcagaccatcctcgaccgcaacacctatgcg
cgtctcgccgaggtgctgatcggccagtcgccgatcgccggcccgaagggcttccgcaag
gacaccacgctgacccgtgagggcatcagcgagtatccccgctcgcaatggtggcagttc
gccgtcgtcgacgaccgtctgatgacggagatcgaggcgatgcagaagcagtacgacgag
tcgaagaagcgcctcgagcagcgcttcctcgacaaggtcgagaagctgcagcgcggtgac
gagctcccgcccggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgcaagatc
cagcccggcgacaagatggccggccgccacggtaacaagggcgtcgtgtcgcgcatcgtg
ccgatcgaggacatgccgttcctcgaagacggcacgcatgccgacatcgtgctcaacccg
ctcggcgtgccctcgcgcatgaatgtcggtcagatcctggaaacccacctgggctgggcg
gctgcgggcttgggtcgcaaggtcgccaaggcggtcgatgcctacctgaagaatcaggac
atcgcgccgctgcggaccgagatggaagcgatctactccccgtccgaactcgaaggcctg
tccgacgaggatctggcggaggccggcaacaatgtccgccgcggcgtgccgatggccacc
ccggtgttcaacggcgccaaggaagccgacatcgagacgatgctggagatggccgggctc
gaccgctcggcgcagtcgacgctctacgacgggcggaccggcgagcccttcgaccgcaag
gtcaccatgggctacatctacatgctgaagctgcaccacctcgtggacgacaagatccac
gcgcgctcgatcggtccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcag
ttcggcggccagcgcttcggtgagatggaggtctgggcgctggaggcctacggcgcggcc
tacacgctgcaggagatgctcacggtaaagtcggacgacgtggccggccgcaccaaggtc
tacgaggcaatcgtccgcggcgacgacacgttcgaggccggcatccccgaatccttcaac
gtgctcgtcaaggagatgcgttcgctcggcctcaacgtcgagctgaccaactccaagcag
cagcaggcggccaacgaccagatcgagccgccggccgacgcggccgagtaa
DBGET
integrated database retrieval system
