Methylibium sp. Pch-M: C1M51_17250
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Entry
C1M51_17250 CDS
T05827
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
metp
Methylibium sp. Pch-M
Pathway
metp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M51_17250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metp03019
]
C1M51_17250
Messenger RNA biogenesis [BR:
metp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1M51_17250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QAZ41027
UniProt:
A0A4P6GYA2
LinkDB
All DBs
Position
complement(3611324..3612658)
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AA seq
444 aa
AA seq
DB search
MSFKELGLAEPLLQAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPML
HRLMARPAVKDARGKIPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQ
IDRLKRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVP
KQKQSLLFSATFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKIHPVDRDKKKELLAH
LIKSQDWHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGALQV
LVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDGFLR
DIEKLIKRSIPREVVPGFEPDPRAVAQPIQIGRQTLNGGLRSGGGGRSGAGRPAGGGGRG
GPRSGGGGGGAPRGGHGGGGGRSR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcaaagaactggggctcgccgagcccctgctgcaagccatcgtcgacgccggc
tacgagacgcccacgccgatccagaagcaggccattccggccgtcatgctgggtggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccggcttcgtgctgccgatgctg
caccgcctgatggccaggccggccgtcaaggacgcccgcggcaagatcccggtgcgggcg
ctgatcctcacaccgacccgcgaactggcggcgcaggtggaggaaagcgtgcgcatctac
ggcaagcacgccaagctcagctcgatggtgatgttcggcggcgtcggcatgcagccgcag
atcgaccgcctcaagcgcggcgtcgacatcctcgtggccacgcccggccgcctgctcgac
caccaccagcagcgcacgctggacctgagccacgtcgagatcttcgtgctcgatgaggcc
gaccgcatgctcgacatgggcttcatccacgacatcaagaaggtgctggcgatcgtgccg
aagcagaagcagagcctgctgttcagcgcgaccttcagcgacgagatcaagaccctggcc
gaccgcctgctgaacagcccgcaagtgatcgaggtggcgcgccgcaacagcaccgtcgag
accatcgctcagaagatccatccggtcgaccgcgacaagaagaaggaactgctggcccac
ctgatcaagagccaggactggcaccaggtgctggtgttctgccgcatgaagcacggcgcc
aaccgcctcaccgaatacctgaacgaccagcgcattaccgcgatggcgatccacggcaac
aagagccagaccgcgcgcaccaaggcgctggccgacttcaagagcggcgcgctccaggtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagttgccccacgtcgtc
aatttcgagttgcccaacgtgtccgaggactacgtgcaccgcatcggccgcaccggccgc
gccggcgccctgggcgaggccgtgtcgctggtctgcgtcgacgaggacgggttcctgcgc
gacatcgagaagctgatcaagcgcagcatcccgcgcgaggtcgtgcccggcttcgagccc
gatccgcgcgccgtggcccagccgatccagatcggacggcagacgctcaacggcggcctg
cgctctggtggcggcggccggagcggcgcgggtcgtccggcgggcggcggcggccgaggc
ggtccgcgcagcggcggcggtggcggcggcgctccgcgtggtggccacggcggaggcggc
ggccgcagtcgctga
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