Mariprofundus ferrinatatus: Ga0123462_0728
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Entry
Ga0123462_0728 CDS
T05213
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mfn
Mariprofundus ferrinatatus
Pathway
mfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0123462_0728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfn03019
]
Ga0123462_0728
03009 Ribosome biogenesis [BR:
mfn03009
]
Ga0123462_0728
Enzymes [BR:
mfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ga0123462_0728
Messenger RNA biogenesis [BR:
mfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ga0123462_0728
Ribosome biogenesis [BR:
mfn03009
]
Prokaryotic type
rRNA processing factors
Ga0123462_0728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATX81598
UniProt:
A0A2K8L2P8
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All DBs
Position
complement(739685..741961)
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AA seq
758 aa
AA seq
DB search
MTTPKKLMLINANHDEESRVAIVEDGYLHELDIESASKALTKSNIYKGKITKVEASLQAA
FVEYGSNRQGFLSLSEIHPDYWKEGVDKSANPRNLSIQDILQPKQEILVQVVKEERGNKG
AALTTQISLAGRYLVLSPNTTRGGISRKLSDDERRSMKEILSQLEVPENMGLIIRTAGKD
QNLEALQRDYNYLRRLWDEIRIKSETTPSPALIYLEGDLATRAIRDHFSDDVQEIWVDNH
EVYTQTKAFVHAVLPGKEKLVKLYRGRKPLFRHYGVESQCEEIHEREIRLPSGGSIVLDP
TEALTAIDINSSRATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKH
GQQVEETLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGSIRT
VESMALQMLTRMEDWAEEGKKPTLIVQVPSDTGEYLMNNKRANIARIEEVNEVQITLQIR
PDLDIPHYRIERQWTENNQQRVEVLEDTSKKIKPPRSGRKLKPVKPVVGIPTPPPPEPEV
KKDGPLKTLLNILTGANRKERLQREAEEEERRKEEEEQRQKRRRSRGGRNRRRGSSERNG
DEVAASDSEQKQSSEAQKPKRKRTRKPRPERTEPTDIVASENDESAGEAKPRRRRRRRRR
PASKDGDSSQSQDQSLTEGQGASSGETPETGGENSQESREKRSRPRRRKPAASSQDTPAS
AEKQESASSASEVATNPEKQNPAARQESKPDAVAAPSE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgactacaccaaagaaactcatgctcatcaatgcaaaccacgacgaagagagtcgcgta
gccattgttgaggacggatatctgcatgaactggatatcgagtcagcaagcaaagcactg
accaaaagcaacatttataagggcaagatcaccaaggttgaggccagcctgcaggctgct
tttgtcgaatacggatccaatcgtcagggtttcctctcattgagcgaaattcaccccgac
tactggaaagagggtgtcgataaatcagccaatcctcgaaacctctcgattcaggacatt
ctgcaaccgaagcaggagatccttgttcaagtggtaaaagaggagcgcggcaacaagggt
gcagcgctgaccacccagatttcgctggccggccgctatctggtcctcagcccaaacacc
acacgtggcggcatctcacgcaaactctccgatgatgagcgacgctccatgaaggagatc
ctctcccagctggaagtgcccgaaaacatggggttgattatccgcactgctggaaaggat
cagaaccttgaagcactgcagcgcgattacaactacctgcgccgtctctgggatgagatt
cgcatcaagagcgagaccaccccgtcccctgccctgatctaccttgagggcgatctggca
acccgtgccatccgcgaccacttttccgatgatgtacaggagatatgggttgataaccat
gaggtctacacccagaccaaggcgtttgttcacgccgtactgcccggcaaagagaaactg
gttaaactctatcgcggcagaaaaccactgttccgccattatggtgttgaatcacagtgt
gaagagatccatgagcgtgaaatccgtctgccttctggcggttccattgttctggatccg
accgaagcactgactgcaattgacatcaactcatcgcgtgccaccaaaggcaagcatatc
gatgataccgccctggccatcaatctggaggcggcagaagagattgcccgtcaattacgc
atccgcgacatcggcggcctgatcgtgatcgactttatcgatatggccagccgcaagcat
ggccaacaggttgaagagacgctgcgcaaggcgtgcaaaggtgataaggcgcgtattcag
ttcgcccgcatttcccgctttggtctgctcgaaatgagtcgtcagcgcctgcatccctcc
gttcgggaatcgaccaccgaaccttgtccgcgctgccagggccgcggctcgatccgcacc
gtcgaatcgatggccttgcaaatgctcacccgtatggaggactgggctgaagagggtaaa
aaaccgacccttatcgttcaggtgccatcggacaccggcgaatacctgatgaacaacaag
cgggcaaatatcgcacgtattgaagaggtgaatgaggttcagattaccctgcagatcagg
ccggatctcgatatcccgcactaccgtatcgaacgccagtggactgaaaacaaccagcag
cgggttgaagtgcttgaagacaccagcaaaaagatcaagccaccacgttccggtcgcaaa
ctcaagccggtaaaacctgtggtaggcatcccaacacctcctccacctgaacctgaagtg
aagaaagatgggccgctaaagaccttgctcaacatactcaccggggccaatcgcaaggag
aggttgcagagagaggctgaagaggaggagcgtcgcaaggaagaggaagagcagcgccag
aaacgacgtcgcagtcgtggcggcaggaatcgtcgccgtggttcaagtgagagaaacggt
gacgaggtcgctgcctccgacagtgaacagaagcagagcagcgaagcgcagaaaccaaaa
cgcaaacgcacccgcaagcccagacctgagagaacggagccaactgatattgtcgccagt
gaaaatgatgaatcagccggtgaagccaaacctcgcaggcgcaggcgcaggcgtagacgc
ccagccagtaaagatggcgactcatctcagtctcaggaccagagcctgactgaaggccag
ggcgccagctccggcgaaactcctgaaacaggtggtgagaacagtcaggagagcagggaa
aaacgctccaggccaagaaggcggaaacctgctgcaagcagtcaggatacacctgccagc
gctgagaaacaggaatccgccagctcagcatctgaggtggcaaccaaccctgaaaaacag
aatccagcagccaggcaggagagcaaacccgacgcggtggctgccccgagcgagtga
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