Methanocaldococcus sp. FS406-22: MFS40622_0786
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Entry
MFS40622_0786 CDS
T01175
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mfs
Methanocaldococcus sp. FS406-22
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfs03019
]
MFS40622_0786
03009 Ribosome biogenesis [BR:
mfs03009
]
MFS40622_0786
04131 Membrane trafficking [BR:
mfs04131
]
MFS40622_0786
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mfs04147
]
MFS40622_0786
Messenger RNA biogenesis [BR:
mfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
MFS40622_0786
Ribosome biogenesis [BR:
mfs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
MFS40622_0786
Membrane trafficking [BR:
mfs04131
]
SNARE
SNARE associated proteins
Others
MFS40622_0786
Autophagy
Aggrephagy
Other aggrephagy associated proteins
MFS40622_0786
Exosome [BR:
mfs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MFS40622_0786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
AAA_2
TIP49
AAA_14
AAA_33
Vps4_C
AAA_22
nSTAND3
AAA_28
AAA_18
IstB_IS21
DUF815
Mg_chelatase
Sigma54_activat
RNA_helicase
AAA_7
AAA_17
Zeta_toxin
AAA_3
Sigma54_activ_2
AAA_24
TsaE
PhoH
ABC_tran
ATP-synt_ab
Parvo_NS1
NB-ARC
bpMoxR
AAA_30
SLFN-g3_helicase
ResIII
AFG1_ATPase
ATPase
Baculo_PEP_C
DUF6674
Allexi_40kDa
Glutaredoxin2_C
Molydop_binding
DUF1572
DUF2203
Baculo_p24
DUF5798
Motif
Other DBs
NCBI-ProteinID:
ADC69471
UniProt:
D3S3Q7
LinkDB
All DBs
Position
complement(783440..786151)
Genome browser
AA seq
903 aa
AA seq
DB search
MVKELKVAEAYQGDVGRGIARIDPYTMEELGLKPGDVIEIEGTKGKAYAIVYRGFLEDAG
KGIIRIDGYLRQNAGVAIGDRVKVKKVEIKEAKKVVLAPTQPIRFGPGFEDFIKRKILGQ
VLSKGSKVTIGVLGTALTFVVVSTTPTGPVRVTDFTQVELKEEPVSEIKETKIPDVTYED
IGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGAN
FYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLV
AQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHT
RNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNL
KVTMDDFKEALKDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEK
IGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRK
ARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVIVIAATNRPD
IIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRAMNLAEDVSLEELAKKTEGYTGADI
EALCREAAMLAVRESIGKPWGIETALRDLINYLQSISGTFRGAAVELNSVIKATKERESA
EAGEFSELKNAIGKIISVLAPAKEKIEAVEKEVDKFLEIINKEDLKPSEKDEANKLAKYL
KDILGKLKEMIDNIYELENKLNTLKEQVSAEEIDEIIKTTQNIIQRFTTSLDELKNILKD
IESIRLKVSTKDVKIKKEHFMKALEKIRPSVSKEDMRVYEKLAQEYGRATSVEKKKEEGK
EVI
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggttaaggaattaaaagttgctgaagcatatcagggagatgttgggaggggtattgcg
agaatagacccctacacaatggaagaactcgggttaaaaccaggagatgttattgaaatt
gaaggaactaagggaaaagcttacgctatagtttatagaggtttcttagaagatgctgga
aaaggaattattagaattgatggttatttaaggcagaacgctggagtagccattggagat
agagtgaaggttaaaaaagtagagattaaagaggcaaagaaagtagtcttagccccaaca
cagccaattagattcggccctggatttgaagactttattaagagaaagatactggggcaa
gttttaagcaaaggttcaaaagtcactattggagttttagggactgccttaacatttgtg
gttgttagtacaactccaactggacctgttagagtaactgacttcacacaagttgaattg
aaagaagagccagtcagtgaaattaaagaaactaagattccagatgttacatatgaagat
attggtggtttgaaagaggaagttaagaaagttagagagatgatagagcttccaatgaga
catccagaattgtttgaaaagttaggaattgaaccaccaaaaggagttttattagttgga
ccaccaggaactggaaagactttattagctaaagcagtagctaacgaagctggagcaaac
ttctacgtaattaacggtccagagataatgagtaagtatgttggagagacagaggagaat
ttaagaaagatatttgaagaagctgaagagaacgctccaagtataatattcattgatgag
attgatgctatagcaccaaagagagatgaagctacaggagaagtagagagaagattagtt
gctcagctcttaaccttaatggatggattgaaaggaagaggacaagttgttgtcattggt
gcaacaaatagaccaaatgcattagacccagctttaagaagaccaggaagatttgataga
gagattgttattggagtgccagatagagaaggtagaaaagagatattgcaaatacacaca
agaaacatgccattagctgaagatgttgatttagactacttagcagatgtaacacacgga
tttgttggggctgatttagcagctttatgtaaagaggcagcaatgagggcattgagaaga
gtattgccaagcattgacttagaggcagaagagattccaaaagaagtgttagataactta
aaagtcacaatggacgacttcaaagaggcattgaaagatgttgagccatcagcaatgaga
gaggttttagttgaagttccaaatgttaagtgggaagatatcggaggattagaggaggtt
aagcaagaattaagagaggcagtagaatggcctttaaaagctaaggaagtatttgaaaaa
ataggagttagaccacctaagggagtattgctatttggaccaccaggaacaggtaagaca
ttattagctaaggctgtagctaacgaaagtggagcaaacttcataagcgttaaggggcca
gaaatctttagcaaatgggtaggggaaagtgagaaagcaataagagagatattcagaaag
gcaagacagtcagcaccatgtataatattcttcgatgagattgatgctatagcaccaaag
agaggtagagacttgagctcagcagttacagataaggttgtcaaccaattattaactgaa
ttggatggaatggaagagccaaaggacgttattgttattgccgcaacaaacagaccagat
atcattgacccagctttattgagaccaggaagattggacagggttatattagtcccagtt
ccagatgaaaaggcaagattggatatattcaagatacacacaagagctatgaacttagct
gaggatgttagcttagaagagcttgctaagaaaactgagggctacactggggctgatatt
gaggcattgtgtagagaagcagcaatgttagcagttagagagagtataggaaaaccatgg
ggaattgaaacagctttaagagacttaatcaactacttacagagcatttcaggaacattc
agaggagcggctgtagagttaaacagtgtcattaaagctacaaaagagagagaatctgct
gaagcaggagagttcagtgagttaaagaatgccattggaaagataattagcgttttagct
ccagctaaggagaaaattgaagcagtagaaaaagaagttgataaattccttgaaattata
aacaaagaagacttgaagccatcagagaaagatgaagctaataagttagcaaaatactta
aaggacatattaggcaagttaaaagaaatgatagacaacatctacgagttggagaacaag
ttgaataccttaaaagaacaagtttcagctgaagagattgatgagataattaaaacaaca
caaaatatcattcaaagattcacaacatcattggatgagctcaagaacatattaaaggat
attgagagcataagattgaaagtttcaacaaaagatgttaagattaaaaaagaacacttc
atgaaagctctcgagaagattagaccatccgtaagtaaggaggatatgagagtttatgaa
aagttggctcaagagtatggaagagccacatcagttgaaaagaaaaaagaagaaggtaaa
gaagtaatctaa
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