Mesoplasma florum W37: mflW37_2150
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Entry
mflW37_2150 CDS
T02878
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfw
Mesoplasma florum W37
Pathway
mfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
mflW37_2150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfw03019
]
mflW37_2150
03016 Transfer RNA biogenesis [BR:
mfw03016
]
mflW37_2150
Enzymes [BR:
mfw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
mflW37_2150
Messenger RNA biogenesis [BR:
mfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
mflW37_2150
Transfer RNA biogenesis [BR:
mfw03016
]
Prokaryotic type
tRNA degradation factors
mflW37_2150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
Pox_RNA_pol
RNase_II_C_S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AGY41282
UniProt:
A0AA86DSC2
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All DBs
Position
237811..239925
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AA seq
704 aa
AA seq
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MNKEIILQKVKENNEMISINSLATKLNYFDLPKLEDYLKELNEENILAFTTEKNVYLLGG
SFKKGNLRMNPKGFGFVNDVLQPEEEAYFVPPVSLNGCFDSDEVIFKVVKDQEKTRAEIV
ELCLRVKEFLIGEIVRSFDGKFLDFIPSDQAFTGFRIRILNKKEFPIQEYQIVKAKIISV
KERLLFVRLKKVIGDARKASDRILSIAEEFEIRTEFEKATLKEAERVNIPVEREVDEINR
RMKNSLLDKMVVTIDGIDSKDLDDAICVEKLENGEFKLYVAIADVSHYVEPKTPLDKEAL
IRGNSTYLANRVLPMLPKILSDDLCSLNPNTKKFALACEMKFDKNGIMISKEVYETIMIS
KVRLNYNEVNEYIANKTWNHCEESRTMIDQAIELFKLIEQVKIKRGTITFDVREPKVIMD
ENSNVIEIKARQTGESEKLIEQFMVSANEAVAEIVYEMELPFIYRNHDKPDEEDLITWYQ
SLKSFGIDPKLTPLEMLDPININKTLKRISEQTKDPIEEELLNLSLLRYMAKAKYELENI
GHFGLSSKCYTHFTSPIRRYSDLIVHRYLKQYIINKDYDQKALEMNEAFIKKASVIINET
ETTSVDCEREVVKACTVEYMSDKIGNIYEGTISVALKFGIFVQLENMVEGLVHISNLEPN
IVYDETNKILIKHDNTFYRMGQKVKIKVISADIRKRKIDFILVK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaataatattacaaaaagttaaagaaaataatgaaatgatatcaattaat
agtttagcaacgaagctaaactattttgatttaccaaaattagaagattacttaaaagaa
ctgaacgaagaaaatattcttgctttcactactgaaaaaaatgtttatttattgggtggt
tcttttaaaaaaggaaacttgagaatgaatccaaaaggatttggatttgtaaacgatgta
ttgcaacctgaagaagaggcttattttgttccccctgttagtttaaatggatgttttgat
agtgatgaagttatttttaaagttgttaaagaccaagaaaaaacaagagctgaaattgtt
gaattatgtttaagggttaaagaatttttaataggagaaatagtaagaagttttgatggt
aagtttttagattttatacctagtgatcaagcatttacaggttttagaattagaatatta
aataaaaaagaatttccaattcaagaataccaaattgtcaaagctaaaataatatcagtt
aaagaaagattattatttgtaagacttaaaaaagtcataggtgatgctagaaaagctagt
gatagaattttatccattgctgaagaattcgaaattagaacagagtttgaaaaagcaact
ttaaaagaggcagaaagagtaaatattcctgttgagcgtgaagttgatgaaataaacaga
agaatgaaaaattcattattagataaaatggttgttacaattgatggaattgactcaaaa
gatttagatgacgcaatatgtgttgaaaaattagaaaatggcgaatttaaattatatgtt
gctattgctgatgttagtcattatgttgaaccaaaaacaccattagataaagaagcatta
ataagaggtaactcaacttacttagctaatagagtcttacctatgcttccaaaaatttta
agtgatgatttatgttcattaaatccaaatacaaaaaaatttgcattagcatgtgaaatg
aagtttgataaaaatggaattatgattagtaaagaagtttatgaaacaattatgatttca
aaagtaagattaaactataatgaagttaatgaatatattgcaaataaaacatgaaatcat
tgcgaagaatcaagaacaatgattgatcaagcaattgaactatttaaattaattgaacaa
gtaaaaattaaacgtggaacaattacttttgatgttagagaaccaaaagtaataatggat
gaaaatagtaacgttattgaaattaaagcaagacaaactggtgaatcagaaaagttaatt
gaacaatttatggttagtgcaaatgaagctgttgctgaaatagtttatgaaatggaatta
ccatttatttatagaaatcatgataaacctgatgaagaagatttaattacatgatatcaa
tcattgaaatcatttgggattgatcctaaattaacaccattggaaatgttagatcctata
aacattaataaaacattaaaaagaattagtgaacaaaccaaagatcctattgaagaagaa
ttattaaacttatctcttttaagatatatggcaaaagctaaatatgaattagaaaatata
gggcattttggtttatcaagtaaatgttatacccacttcacttcaccaattagaagatac
agtgatttaattgttcacagatatttaaaacaatacattattaataaagattatgatcaa
aaagcattagaaatgaatgaagcatttatcaaaaaagcatcagtaataattaatgaaaca
gaaacaactagcgtagactgtgaacgagaagtagttaaagcttgtacagttgaatatatg
agcgataaaataggaaatatttatgaaggaacaatctctgtagcattaaaatttggtatt
tttgttcaacttgaaaatatggtagaaggtttggttcatatttcaaatcttgaacctaac
atagtttatgatgaaactaataaaatactaattaaacatgataatacattttatagaatg
ggacaaaaagttaaaattaaagttataagcgctgatattagaaaaagaaaaattgacttt
attttagttaaataa
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