KEGG   Mycolicibacterium gilvum PYR-GCK: Mflv_1828Help
Entry
Mflv_1828         CDS       T00498                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mgi  Mycolicibacterium gilvum PYR-GCK
Pathway
mgi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Mflv_1828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mgi03400]
    Mflv_1828
Enzymes [BR:mgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mflv_1828
DNA repair and recombination proteins [BR:mgi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Mflv_1828
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ABP44308
UniProt: A4T6Z6
LinkDB All DBs
Position
1897531..1899831
Genome map
AA seq 766 aa AA seqDB search
MVDRYDRVKLTNPDKVLYPASGTTKAQVFEYYVNVAEGMLPHIAGRAVTRKRWPNGVEES
SFFEKQLASSAPDWLDRGTIAHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTRGG
QSGAADGGDGKPGPATRIVFDLDPGEGVTFRQLCEVAHEVRELITDIGLTTFPLTSGSKG
LHLYVPLEDPISSRGASVLAKRVAQQLEQSMPKRVTATMTKSLRDGKVFLDWSQNNGNKT
TIAPYSLRGRERPTVAAPRTWDEIEDPDLRHLTFDEVLDRLERDGDLLADLDPPLPATDK
LTRYRSMRDRTKTPEPVPAEPPETGANDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKN
LPDTPSVNHLAVHTEDHPMDYIDFAGEIPKGEYGGGEVHIWDTGTYETEKFRDNPPDGPA
KGGEVIVTLHGQKIEGRYALIQTDGKNWLAHRMKDQQKPTAADLAPMLTTEGSVERLTRG
QWAFEGKWDGYRLLVDADHGKLTLRSRRGRDVTAEYPQLKALAADLADHHVILDGEAVAL
DEDGVPSFGEMQNRARSTRVEFWAFDILFLDGRLLTKATYTDRRKLLEALAEGGGLIVPP
ALEGDGPEALEYARSQRWEGVIAKKRDSTYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEG
GRTSGIGALVLGVPDDDGLHFVGRVGTGFTDKQLASLKKTLEPLRTDESPFAAELPKQDA
KGVTFVRPELVGEVRYSERTSDGRLRQASWRGLRDDKVPEDVRWEG
NT seq 2301 nt NT seq  +upstreamnt  +downstreamnt
gtggtggaccgttatgaccgggtgaagctgaccaacccggacaaggtgctgtatccggcc
agcggcaccaccaaagcgcaggtcttcgagtactacgtgaatgtcgccgagggcatgctg
ccacacatcgccggacgtgccgtgacacgtaagcggtggccgaacggcgtcgaggagtcg
tcgttcttcgagaagcagctcgcgtcgtcggcgccggactggctggaccgcggcaccatc
gcgcacaagtccggcaccaccacctatccggtcatcgacaccgtcgaggggctggcctgg
atcgcgcagcaggcggcgctggaggtgcacgttccgcagtggcggttcacccggggcggg
cagagtggggcggctgacggcggggacggaaagccggggccggcgacgcggatcgtgttc
gacctcgaccccggcgagggtgtcacgttccgtcagctctgcgaggtcgcccacgaggtg
cgcgagctcatcaccgacatcgggctcacgacgttcccgctgaccagcggaagcaagggc
cttcatctgtacgtcccgctggaggacccgatcagttcccgcggggcgtcggtgctcgcc
aagcgcgtggcgcaacagctcgagcagagcatgcccaagcgggtcaccgcgacgatgacc
aagagcctgcgcgacggcaaggtgtttttggactggagtcagaacaacggcaacaagacc
acgatcgcgccgtactcgcttcgtggacgggaacgtccgacggtcgccgctccccggacg
tgggatgagatcgaggacccggacctgcgtcacctgaccttcgacgaggtgctcgaccgg
ttggagcgcgacggtgacctgctcgccgacctcgacccgccattgccggccaccgacaag
ctcacccgttaccgcagcatgcgagaccgcacgaagacgccggagccggtgcccgctgag
ccgcccgagaccggcgcgaacgacaagttcgtgatccaggagcaccatgcgcggcggttg
cactacgacttccggctggagcgtgacggtgtcctggtgagttgggcggtaccgaagaac
cttcccgacaccccgtcggtcaatcaccttgcggtgcacaccgaagaccatccgatggac
tacatcgacttcgccggcgagatcccgaaaggggagtacggcggcggcgaggtccacatc
tgggataccggcacgtacgagacggagaagttccgcgacaacccgcccgatggaccggcc
aagggcggcgaggtgatcgtcacgctgcacggtcagaagatcgagggccggtacgcgttg
atccagaccgacggcaagaactggctcgcgcaccggatgaaggaccagcagaagccgacc
gcggccgacctggcgccgatgctgaccaccgagggatcggtggagcgactcaccaggggc
caatgggcgttcgaggggaaatgggacggctatcggctcctggtcgacgccgaccacggc
aagctgacgctgcggtctcggcggggccgtgacgtcaccgccgaatacccgcagttgaag
gcgctcgccgccgacctggccgaccatcacgtgattctcgacggggaggcggtggcgctc
gacgaggacggggttccgagtttcggtgagatgcagaaccgggcccggtcgacgcgggtc
gagttctgggcgttcgacatcctgttcctcgacggccggttgctgaccaaggccacgtat
accgatcggcgaaagctgttggaggcgttggccgaaggcggaggattgatcgttccaccc
gcccttgagggggacgggcccgaggcgctggagtacgccagatctcagcggtgggagggc
gtgatcgccaaaaaacgggactccacgtatcagccgggccggcggtcctcggcctggatc
aaggacaagatctggaacacccaggaagtggtgatcggcgggtggcgccagggtgaaggt
gggcgcacgagcgggatcggggcgctcgtgctcggagtgcccgacgacgacggactgcac
ttcgtcggacgtgtcggcaccgggttcaccgacaagcagctggcgtcgttgaagaagact
ctggagccgctgcgcaccgacgaatcacccttcgcggcagagcttcccaagcaggacgcc
aagggggtgacgttcgtgcggccggaactggtgggggaggtgcgctacagcgagcgcacg
tccgacggtcgtctgcggcaggcgagctggcgcggtctgcgcgacgacaaggttcccgag
gatgttcggtgggaggggtag

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