Mucilaginibacter gossypii: DIU38_014605
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Entry
DIU38_014605 CDS
T06453
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mgos
Mucilaginibacter gossypii
Brite
KEGG Orthology (KO) [BR:
mgos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mgos03016
]
DIU38_014605
Enzymes [BR:
mgos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DIU38_014605
Transfer RNA biogenesis [BR:
mgos03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DIU38_014605
Prokaryotic type
tRNA splicing ligases
DIU38_014605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEM17249
LinkDB
All DBs
Position
3435792..3437246
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AA seq
484 aa
AA seq
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MEKIKISNNELTSLGINDVKILENFSRVANGLLKHGVMDKEQILANLEALIDEPMPYALK
KGGKFKNLAEAVIDLRKEGKFLKQPRTSFALKQEIADFPVYGLEHIEVGALAQMKTAVKL
PIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVDIACRMCLSIFDLPAGVVDTET
DMLKGLLLDHTNFGIGGVTKTHFDTSLFDSPVWSETKVIRNLKNKAYAQLGTSGTGNHFV
EWGELTVTEGALEGIPAGSYLALLSHSGSRGFGGSIADHYSKIAMSKTKLPQEAKHLAWL
NLDNDEGQEYWIAMNLAGDYASANHHEIHNKIARALNLKPVMMIENHHNFAWKEQLADGT
EVMVHRKGATPAGEGVLGIIPGSMSTPGFVVRGKGDAVSINSASHGAGRLMSRSAAFKTV
DPKAVAANLVDKRITLMGSDLDEAPMVYKDIHAVMAAQHDLVDVLASFQPRIVRMADAKE
KPED
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagataaaaataagcaacaacgaattaacctcattaggtattaacgacgtaaag
atattagagaactttagccgcgtggccaatggcctgttaaaacacggcgtaatggataag
gaacagatcctggctaacctggaagcccttattgatgaaccgatgccttacgcccttaaa
aaaggcggtaagttcaagaacctggccgaagccgtgatcgatctgcgtaaagaagggaaa
tttttgaaacaaccgcgaacttcgtttgccctgaagcaggaaattgccgattttccggtt
tacggccttgagcatattgaagtgggtgcgcttgcgcagatgaaaaccgcggttaaatta
cccatagccgtggcaggcgctttaatgcccgatgcccaccagggttacggcttgcctatt
ggcggcgtgctggctacaactgccaacaccatcatcccctttgctgttggggtggatatt
gcctgccgtatgtgtttgagcatttttgatttacctgccggtgtggttgataccgaaacc
gacatgcttaaaggccttttgcttgatcataccaactttgggattggcggggttaccaaa
acgcattttgatacctcgctgttcgacagccctgtatggagcgaaaccaaggtgatccgg
aacctgaagaataaggcttatgcccaattgggaacttcaggtaccggcaaccactttgtt
gaatggggtgagcttactgttaccgaaggcgcgcttgaaggcatcccggccggtagttac
ctggctttattgtcgcactcaggttcacgagggtttggcggaagcattgccgatcattac
tcaaaaattgctatgagcaaaaccaagcttccgcaggaggccaaacatttggcatggtta
aacttggataacgacgaagggcaggaatactggattgccatgaacctggccggcgactat
gccagcgccaatcaccatgaaatccataataaaattgcccgtgcgcttaaccttaaaccg
gttatgatgatagaaaaccaccacaactttgcctggaaagagcagcttgccgatggtacc
gaagtaatggtacaccgaaagggcgctactccggcaggcgaaggtgtattagggatcatt
cccggcagtatgagcacacctggctttgtagtgcgcggtaaaggcgatgcggtttctatc
aactccgcatcgcatggcgcaggccgtttaatgagccgaagcgccgcctttaaaactgtg
gatcccaaagcggttgctgctaacctggtagataaacgcattaccctaatgggaagcgat
ttggacgaagcgccgatggtgtacaaggatatccatgcagtaatggccgcccaacatgat
ttggttgatgtattggcaagctttcagccgaggattgtgaggatggctgatgctaaggaa
aagccggaggattag
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