Meleagris gallopavo (turkey): 100543831
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Entry
100543831 CDS
T01523
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X5
KO
K16617
collagen type XIII alpha
Organism
mgp
Meleagris gallopavo (turkey)
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mgp00536
]
100543831 (COL13A1)
Glycosaminoglycan binding proteins [BR:
mgp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100543831 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100543831
NCBI-ProteinID:
XP_019473060
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Position
8:10463411..10544515
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AA seq
805 aa
AA seq
DB search
MLEEKSWKGVGEAAFERGCVAPPRTGDGERCCRLPLLLGSGLPGISLLSLVLSLLLYFRT
SDLQSRVSHLEADRSTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRETHQRC
NCPAGPPGATGRPGLPGDKGAMGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGYPGQKGEMGATGPRGQPGPPGQKGEKGQCAEYSHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPAGPAGPKGTPGQPGPSGSPGRAGEPGK
PGRDGKGLPGPPGAKGDPGIQGYPGRKGEAGMSGLPGAHGLPGATGPKGEKGDTGIKGER
GMPGLPGRHGMKGAPGMATAGMKGEPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGRAG
DPGLPGPKGEKGNGENALVGGKGEPGPPGLPGPPGPKGEAGDVGAAGSRGEKGERGAPGE
QGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIG
LPGPPGHDGEKGPRGKPGEMGPPGPHGLPGRDGPPGIKGEPGQIGVAGEKGHKGEPGQAG
SPGLDGPTGEKGERGDQGMPGPPGLPGPIGLPGLTGEKGQPGERGDKGNPGESMSGPPGP
QGPPGPPGLQGLPGPKGEAGIDGMKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGP
IGVSGPAGPKGERGSKGDPGVVGPMGPAGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGD
QGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaagggtgttggtgaagcagcttttgaaagggggtgcgtg
gctccccccaggaccggagacggggagagatgctgccgcctcccgctgctgctgggctcg
gggctgcccggcatctccctgctctctctggtgctcagcctcctgctgtactttcggacc
tctgatctgcaatcccgggtgtcccacttggaagcagacagatccacgcagctccctgcc
tggctctcagcagaccaaatggagacggctattttgggaagagttgaccaactgcttgat
gagaaattgaagtttcacttgccgagacatcgagaagttcgagagacacaccagcgatgc
aactgcccagcaggtccacctggtgctacaggaagaccaggacttccgggagacaaaggc
gcaatggggattcctgggcggccgggactaaaagggcaacccggagagaagggtgctcca
ggagaagcaggcatgtctatcattggaccccgtggtccacccggacagcctggaacaaga
ggttttcctggattcccgggtcctattggcttggatggcaaaccgggttatcctggacag
aagggggagatgggtgccacaggtccccggggacagcccggacccccaggacaaaaagga
gaaaagggtcagtgcgcagagtactcccacaggctgttgcctctcctcaattcagtgcgg
ctggctccacctccggtcataaagagacgcactttccagggtgaacaaggacaagcagga
atccaaggtcctccggggccacctggcccaccggggcccgctggaccagctggacccaag
ggaaccccaggacagcccggaccaagtgggtcacctggcagagctggagaacctgggaag
cccggcagagatggaaagggcttacctgggcctcctggagcaaagggagaccctgggatt
caaggataccctgggagaaagggtgaggcgggcatgtcaggcttgcctggtgcgcatggc
ctccctggagctactggccccaagggtgaaaaaggggacactggcataaagggagagaga
ggcatgccagggctgccaggaagacatggcatgaagggtgctcctgggatggccacggca
gggatgaagggtgagcctgggactccaggagaaaagggagatcctggagtcccagggagg
atgggccccccaggtttgccagggaaaagggggcagcggggcgagaagggccgagctggt
gatcctgggctccctggccctaagggagagaagggaaatggtgagaatgccttggtggga
ggcaaaggggaacctggccctcctggtttgcctgggccccctggaccaaagggagaagct
ggtgacgttggtgctgcaggatcacggggggaaaagggagaacgtggtgcaccaggagag
cagggacccatggggccaaggggtcccaaaggagagcctggaaaggatgaaatgatggac
tacgatggtaacatcagtgaagctctccaggaaatacgaaccttggccttgatgggacca
ccaggacttccaggtgtggctggacctccagggccaccaggacagaagggtgaaattggc
ttaccgggtcctccaggccatgatggagaaaagggaccacgaggcaagccaggagaaatg
ggtccccctggacctcatggactgccaggaagggatggaccacctggaataaagggagag
ccgggccagattggggttgcaggagaaaaggggcataaaggagagccaggacaagcaggc
tcaccgggtcttgatggccccactggagagaaaggagaacgaggtgaccaagggatgcca
ggaccaccaggattgccgggtcccattggacttccaggattgacaggagagaagggtcag
cctggggagcgtggagacaaaggaaatccaggagaatcgatgtctggcccccctggacct
caaggcccaccaggacctccaggtcttcagggccttccaggaccaaagggggaagcaggg
attgatggaatgaaaggagagaagggtgtccagggtgaaaaaggagacagagggccactg
ggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtactccaggacca
attggggtttcgggaccagcaggaccaaaaggagaaaggggtagtaaaggagatcctgga
gttgtaggaccaatgggaccagcaggacttcctggtttacaaggtctgccaggtgacaaa
ggaatccggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagac
caaggagcgcctggattagatgcaccctgtccgttgggagaagatggccttccggttcaa
ggctgctggaataagtga
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