Magnetospirillum gryphiswaldense MSR-1: MSR1_21780
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Entry
MSR1_21780 CDS
T05662
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mgry
Magnetospirillum gryphiswaldense MSR-1
Pathway
mgry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSR1_21780 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgry03019
]
MSR1_21780 (rhlE_2)
Enzymes [BR:
mgry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSR1_21780 (rhlE_2)
Messenger RNA biogenesis [BR:
mgry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSR1_21780 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NACHT
GcpE
ERCC3_RAD25_C
UTP25
DsrH
Motif
Other DBs
NCBI-ProteinID:
AVM74663
LinkDB
All DBs
Position
2320814..2322154
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AA seq
446 aa
AA seq
DB search
MTSFKDLGLAEELTFALDAEGYTTPTPIQEQAIPHLLAGHDMLGIAQTGTGKTAAFALPI
LHRIASDKRRAAPRTVRNLILTPTRELAVQINDGFATYGRNIRFRRACVFGGVGQGPQVR
ALNGGVDVLVATPGRLLDLMDQGFVNLSGIQTLVLDEADRMLDMGFIQPVRKIAALLPTG
RQTLLFSATMPKAVADLASFLLRDPVRVEVTPVSSTAERIEQKVLFVTRENKRNLLLDLL
RGKGVGRAIVFTRTKHGANRVAEQLMKDGVTADAIHGNKSQNARQRALDAFRSGEVQALV
ATDIAARGIDIDNVTHVINFELPNEPESYVHRIGRTARAGAEGIAVSFCDAEEVAYLRQI
EKIIQQPVPVDIEHEYHAEPVARLFASGKGNPPKRGGGGARPFVGGNRPKGPSAGRPGGG
GAPGGGNGGQRRHAAGPGGHGHGKRG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgttcaaagacctcggcctggccgaagaattgacctttgccctcgacgccgag
ggttacaccacgccgaccccgattcaggaacaggccatcccgcatctgctggccggccac
gacatgctgggcatcgcccagaccggcaccggcaagaccgccgccttcgccctgcccatc
ctgcaccgcatcgccagcgacaagcgtcgcgccgcgccccggaccgtgcgcaacctgatt
ttgacgccgacccgcgaactggccgtgcagatcaatgacggtttcgccacctatggccgc
aacatccgtttccgccgcgcctgtgtgttcggcggtgtcggccagggcccgcaggtccgt
gccctcaatggcggcgtcgacgtgctggtcgccactcccggtcgcctgctcgacctgatg
gaccagggcttcgtcaacctgtcgggcatccagaccctggtcttggacgaagccgaccgc
atgctcgacatgggcttcatccagccggtgcgcaagatcgccgccctgctgcccaccggt
cgtcagaccctgctgttctcggccaccatgcccaaggcggtagctgatctggccagcttc
ctgctgcgcgacccggtgcgcgtcgaggtcaccccggtgtcgtcgacggctgaacgtatc
gaacagaaggtgctgttcgtcacccgcgagaacaagcgcaacctgctgttggacctgctg
cgcggcaagggcgtgggccgcgccatcgtcttcacccgcaccaagcacggcgccaaccgc
gtcgccgagcagctgatgaaggacggggtcaccgccgacgccatccacggcaacaagagc
cagaatgcccgccagcgggcgctggacgccttccgctcgggtgaagtgcaggctctggtc
gccaccgacatcgccgcccgcggcatcgacatcgacaacgtcacccacgtcatcaatttc
gagctaccgaacgaaccggaaagctatgtccaccgtatcggtcgcaccgcccgcgccggt
gccgaaggcatcgccgtgtcgttctgcgacgccgaggaagtggcttacctgcgccagatc
gaaaagatcatccaacagccggtgccggtggatatcgaacacgaataccatgccgagccg
gtggcccgtctgttcgccagcggcaagggcaacccgcccaagcgtggcggcggcggtgct
cgtccgttcgtcggcggcaaccgccccaagggtccgtccgcgggccgtccgggtggcggt
ggcgcccccggcggcggcaacggcggccagcgccgtcatgctgccggccccggcggccac
ggccacggcaagcgtggctaa
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