Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__2178
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Entry
MGMSRv2__2178 CDS
T02960
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03030
DNA replication
mgy03410
Base excision repair
mgy03420
Nucleotide excision repair
mgy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MGMSRv2__2178 (ligA)
03410 Base excision repair
MGMSRv2__2178 (ligA)
03420 Nucleotide excision repair
MGMSRv2__2178 (ligA)
03430 Mismatch repair
MGMSRv2__2178 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mgy03032
]
MGMSRv2__2178 (ligA)
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__2178 (ligA)
Enzymes [BR:
mgy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MGMSRv2__2178 (ligA)
DNA replication proteins [BR:
mgy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MGMSRv2__2178 (ligA)
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MGMSRv2__2178 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MGMSRv2__2178 (ligA)
MMR (mismatch excision repair)
DNA ligase
MGMSRv2__2178 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MGMSRv2__2178 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CDK99393
UniProt:
V6F4I1
LinkDB
All DBs
Position
2301592..2303670
Genome browser
AA seq
692 aa
AA seq
DB search
MTIEIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPE
LAAGSPTAKIGAPAADGFGKVRHGVPMLSLDNAFSEDDVREFEGRIRRFLALPPDLPIAF
VAEPKIDGLSISLRYENGHFVRAATRGDGSEGEDVTANIRTLIDSGKIPERFNDAPALIE
VRGEIYMTKADFLALNQRQEAAGDKPFANPRNAAAGSLRQLDPTITASRPLSLFAYAQGE
VIGEVGDSHSAFLDRLRAWGFPVNDRIQTCHGAEDLLARYAAIGTARADLDYDIDGVVYK
VDRFDWQQRLGFVSRSPRWAIAHKFPAEQATTLLERIEIQVGRTGALTPVAHLTPVNVGG
VVVSRASLHNEDEIIRKGVREGDTVIIQRAGDVIPQVVGVVMDKPRGAAEFIFPDTCPVC
GSHAVRTGDEVIRRCSGGLACKAQVKERLRHFVSRNAFDIEGLGDENIDFLCEGEWINKP
ADIFRLEAANAGRLQRLQNYKGWGEKKVTKLFAAITARRTIALERLIYALGIRQVGEATA
KRLARHYGSFAVWRESMLAAVPRENDSYHDLISIEDIGPAVANDILAFFAEDHNVAALDD
LAAQLTINDAQKIEAGNSPVSGKSVVFTGELVAMTRAEAKARAEMLGAKVVGSVSKKTDY
VVAGPGAGSKLAEAEKLGLTVLSEQQWLELIS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagaaatcgacgccttgaccccgtttgaagcccgcatcgaggccagcgccctg
cgggaaaagctgatccgttgggatctggcctatcaccaggccgatgcccccgaggtggac
gacgccacctatgacgcggccaagctgcgcctgctggccatcgaggcgcgctttcccgaa
ctggcggcgggcagccccaccgccaagatcggcgccccggccgccgacggtttcggcaag
gtccgccacggcgtgcccatgctgtccttggacaacgctttttccgaagacgatgtgcgc
gagttcgagggccgcatccgccgctttctcgccctgccccccgacctgcccatcgccttt
gtcgccgaacccaagatcgacggcctgtccatcagcctgcgctatgagaacggccacttc
gtccgtgccgccacccgtggcgacggcagcgagggcgaggacgtcaccgccaatatccgc
accctgatcgatagcggcaaaatccccgaacgcttcaacgacgcccccgccctcatcgag
gtgcgcggcgaaatctatatgaccaaggccgactttttggcgctgaaccagcgccaggaa
gcggcgggcgacaagcccttcgccaatccccgcaacgccgccgccggcagcttgcgtcaa
ttggacccaaccatcactgcgtcgcggcccttgtcgctgttcgcctatgcccagggcgag
gtgatcggcgaggtgggcgacagccattccgcctttctcgaccgcctgcgcgcctggggt
tttcccgtcaacgaccgcatccagacctgccacggggccgaggacttgctggcccgctac
gccgccatcggcacggcccgcgcggacctcgattacgacatcgacggtgtggtctataag
gtcgaccgcttcgactggcagcaacgcctgggtttcgtcagccgctcgccccgctgggcc
atcgcccacaaattcccggcggaacaggccaccactctgctggagcgcatcgaaatccag
gtgggccgcaccggggccttgaccccggtggcgcatctcaccccggtcaatgtgggcggt
gtggtggtcagccgcgcctccttgcacaacgaagacgagatcatccgcaagggcgtgcgc
gagggtgacaccgtcatcatccagcgcgccggcgacgtcatcccgcaagtggtcggcgtg
gtcatggacaagccgcgcggcgccgctgaattcatcttccccgacacctgcccggtctgc
ggcagccatgcagtcagaaccggcgacgaggtcatccgccgctgttccggcggcttggcg
tgcaaggcccaggtgaaggaacggctgcgccatttcgtttcccgcaacgccttcgacatc
gagggattgggcgacgagaacatcgactttttgtgtgaaggcgaatggatcaacaagccg
gccgacatcttccgcctggaagccgccaatgccgggcggctgcagcggctgcaaaactac
aagggctggggcgagaagaaagtcaccaagctgtttgccgccatcaccgcccggcgcacc
atcgcgctggaacggctgatctatgcgttgggcatccgtcaggtgggcgaggccacggcc
aagcggctggcccggcattacggcagctttgccgtctggcgcgaatccatgctggcggcg
gtaccgcgcgagaacgacagctatcacgacctgatttccattgaagatatcggcccggcg
gtggccaacgacatcctggcctttttcgccgaggatcataatgtggccgcgctcgacgat
ctggccgcgcaactgaccatcaacgacgcccagaagatcgaagccggcaattccccggtt
tcgggcaagtcggtggtgttcaccggcgaattggtggccatgacccgggccgaggccaag
gccagggccgagatgctgggggccaaggtggtgggcagcgtgtcgaagaagaccgattac
gtcgtcgccggccccggcgccggctcgaaactggccgaggcggaaaagctgggcctgacc
gtgctcagtgaacagcaatggctggaactgatcagttaa
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