KEGG   Mycobacterium haemophilum: B586_06195Help
Entry
B586_06195        CDS       T04111                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mhad  Mycobacterium haemophilum
Pathway
mhad03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mhad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B586_06195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhad03400]
    B586_06195
Enzymes [BR:mhad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B586_06195
DNA repair and recombination proteins [BR:mhad03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B586_06195
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AKN16243
LinkDB All DBs
Position
complement(3445649..3447928)
Genome map
AA seq 759 aa AA seqDB search
MGSTAQPVTLTNADKVLYPATGTTKHDVFDYYTQIAEAMVPHLAGRPATRKRWPNGVDQP
SFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSPTALAWIAQQAALEVHVPQWRFVGDP
GRLQPGPATRLVFDLDPGDGVTMAQLAEVARAVRDLIADIGLTTFPLTSGSKGLHLYTPL
DQPVSSRGATVLAKHIAQQLEKAMPTLVTSIMTRKLRAGKVFVDWSQNSGSKTTIAPYSL
RGREHPTVAAPRSWEELDDPALCQLRYDEVLGRVAHDGDLLARLDAPDARVPSPDRLTKY
RSMRDASKTPEPISSTKPAKPATGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PDTPSVNHLAVHTEDHPLDYATFEGEIPKGEYGAGKVIVWDSGTYDTEKFRDSAEKGEVI
VTLHGSRITGRYALIQTDGDQWLAHRMKDQKVFAFDEIAPMLATHGSVATLKAGQWAFEG
KWDGYRLLIEADHGTVRLRSRSGRDVTAEYSQLRSLAADLTEHHVVLDGELVALNKSGVP
SFNEMQNRNHATRIEFWAFDLLYLDGRSLLRARYLDRRKLLETLATASSLIVPELLPGDG
AEALEYSRKHGWEGVVAKRRDSSYQPGRRSASWVKDKHWKTQEVVIGGWRAGEGGRSSGI
GALLMGIPAAGGLHFAGRVGTGFTGRDLTNLKKMLAPLRSDRSPFDDSLPARDARGVTFV
TPVLVGEVRYSGWTADNRLRQTSWRGLRPDKQPSEVVRE
NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt
atgggctcgacggcgcagccggtgacgctgaccaacgccgacaaggtgctgtacccggcg
accgggaccacaaagcacgacgtcttcgattactacacgcagatcgccgaggcgatggtg
ccgcatctcgccggacgtccggcgacccgtaagcgctggcccaacggggtcgaccaaccc
tcgttcttcgaaaagcagctggcgtcatcggcgccggactggctgccgcgcgccagcgtg
acccaccggtcgggaaccacgacctatccgattatcgacagccccaccgcgctggcctgg
atcgcgcagcaggccgcgctggaggtacatgtgccgcagtggcggttcgtcggagatccc
ggcaggttacaacctggcccggcgacccgattggtgttcgacctggaccccggtgacggc
gtgacaatggctcagctggccgaagtggcccgcgcggtccgggacctgatcgccgatatc
gggctgaccaccttcccgctcaccagcggcagcaaggggctgcacctctatacgccgctt
gaccagccggtgagcagccgaggcgccacggtgttggccaaacacattgcgcagcaactg
gaaaaggccatgcctaccctggtgacgtcgatcatgacgcgaaagttgcgggcggggaag
gtgtttgtggactggagccaaaacagcggctcgaagaccaccattgcgccgtactcgctg
cgcggccgagagcacccgaccgtcgcggcgccacgcagctgggaggaactcgacgatccc
gcgctatgccagctgcgctacgacgaggtacttggccgggtcgctcatgacggtgacctg
ctggcgcggctggacgccccggacgcccgagtgcccagcccggatcggctgaccaagtac
cgcagcatgcgcgacgcatcgaagactcccgaaccgatatcttcaacgaaaccggcgaaa
ccggcgactggccaaggcaatacgttcgtcatccaggagcaccacgcccgccgattgcac
tacgacttccggctggaacgagacggggtactggtgtcgtgggcggtgccgaaaaacctg
ccagacaccccgtcggtgaaccatctggcggtacacaccgaggatcatccgctggactac
gccacattcgagggtgagatcccgaaaggtgaatatggcgctggcaaggtgatcgtctgg
gactcgggaacctacgacaccgagaagttccgcgactccgctgaaaaaggggaggtcatc
gtcaccttgcatggcagccggatcaccgggcgctatgcgctgattcaaaccgacggcgac
cagtggctggcgcaccggatgaaggaccaaaaggtcttcgcgttcgacgagatcgccccc
atgctcgcgacgcacggttcggtggcgaccctgaaggcaggccagtgggcgttcgaaggc
aagtgggacggctaccgactcctgatcgaggctgaccacggtacggtacggttgcggtcc
cgcagtggacgtgacgttaccgcagaatattcacaattgcgttcactggcagccgatctc
accgaacaccacgtggtgctcgacggtgaactcgtcgctctcaacaaatccggtgtgccc
agcttcaacgagatgcagaaccgtaaccacgccacccgcatcgagttttgggcgttcgat
ttgctctatctagacggccgctcgctgcttcgggcgcgctaccttgaccggcgcaaactg
ttggaaaccttggccactgcaagcagtctcattgttcccgagctgctgcccggcgacggc
gccgaggctctcgagtactcacgcaagcacggctgggagggtgtggtcgccaagcggcgc
gactccagttatcagccgggccggcgctctgcgtcgtgggtcaaagacaaacactggaaa
acccaggaggtcgtcatcggtggctggcgcgctggggaaggcggacgtagcagtggcatc
ggtgcgctgctgatgggcatccccgctgctggcgggctgcatttcgccgggcgggtcggt
accggcttcactgggcgcgacctgaccaacctcaagaagatgctggcgccactgcgcagc
gaccgctctccgtttgatgactcgcttcccgcacgcgacgccagaggcgtgacgtttgtc
acgccggttttggtcggcgaggtgcgctatagcggatggaccgcggataaccggctgcgc
caaacgagctggcgtgggctgcgcccagacaagcaaccaagtgaggtggtgcgggaatga

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