Marinobacter nauticus ATCC 49840: MARHY0011
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Entry
MARHY0011 CDS
T02083
Symbol
recB
Name
(GenBank) exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MARHY0011 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhc03400
]
MARHY0011 (recB)
Enzymes [BR:
mhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MARHY0011 (recB)
DNA repair and recombination proteins [BR:
mhc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MARHY0011 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CCG93515
UniProt:
H8WA90
LinkDB
All DBs
Position
complement(16280..20056)
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AA seq
1258 aa
AA seq
DB search
MGSRTGQVGGGANREHGMTEQRTNRNPSLDPLALPLNGSALIEASAGTGKTFTIAILYVR
LVLGHGQAEDSPLQNLLPPNLLVVTFTDAATKELRDRIRTRLTQAAEVFSDAADHLEPIP
ETALIHKLRDDSYPDPARWPDCRKKLLLAAEWMDEAAVSTIHGFCNRMLSEHAFDSGSLF
KLTLETDQSELLDEVARDYWRTFVYPLPPALMDEALSHWKTPTDLRKAVRNLIDDPDALG
TPPQSVHEAIDQVVSERLARAGELKAHPWAQWQQEVTDLLNDLNKGKRLHGGSKNAMLKV
WEFLVAWAESDELLPEKLDSAAGYKNQTPEGLDNILKGDDQAPHHPAFDAIDALLAFGQN
PPSAKSDILRHASHWIAGRLEAEKQQRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFP
VALIDEFQDTDPVQYRIFNRIYNVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQARLG
VQARTYTLGKNFRSAETMVSAVNRVFEHSDQFSARGAFLFGKGDSTPLPFQGVDANGTRR
LWSVQGEVQPSLVFWAHESGETDKEGNPKGLAKGAATAKMAETCASEIARLLTLGQGRQA
GFALPDSPNDLEPVEPRDIAVLVNNRNEAAAVRDALGRRRIKSVYLSDRDSVLTSREANE
VLCWLRAFAEPRQLAFIRAALATPTLGQSWQALDRLLTDELILEREIERFQRYQQQWQSQ
GVLPMLRSFLMDFEVPGRLLQRSDGERRLTDILHIAELLQQDSLQLDGEHALVHHFTQIL
RAADEEDEHRTLRLESDAGLVKVITVHKSKGLEYPLVFLPFGTAFRAENPKQAYVRYHDD
TGKLVTVFDPTPEDIERADQERLGEDIRKLYVALTRARFATWVGAAAVDNWYQSGLGYAI
AGTPEQSISQALASLAQGRPEIRISPLPEAGNTIFTEMAPDALGPALISTREAKEDWWIA
SYSTIEYTGMTGTGITFTGEVEDAQTQNLLEESAQEHVEEAPAVPAIRNHHHFPKGAGPG
TFLHELLEWCTAQGFQRVVDNPELLHEQLARRCGTRGWGDWVEPLQHWLLALIRKPLRLD
RDGRETASLAQLANLRPELEFWFESRNVSIHKLDKLVTRYTLNGADRPRAEANRFNGMLK
GFIDLVFEHKGQYYVLDYKSNALGEDDDAYTDQAMGQAILDKRYDLQYILYLLALHRLLK
ARLPGYDYDQHIGGAVYLFLRGVNSASGGAFTDKPPRVLIEQLDALFDGEPVSGEVAA
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
gtgggaagccgaacagggcaagtcggcggcggagcaaatcgggagcatggaatgacggaa
cagagaaccaaccgaaacccgagtctggacccactggccctgcccctgaacggcagcgcg
ctgatcgaggccagcgcaggcaccggcaaaaccttcaccatcgccatcctgtatgtgcgc
ctggtgctgggccatggccaggcagaagacagcccgctgcagaacctgttgccgcctaac
ctgctggtggtcacctttaccgacgccgccaccaaggagctgcgggaccgcatccgcacc
cggctgacccaggccgccgaggtgttttccgacgccgctgaccacctcgaacccatcccg
gaaaccgcacttatccacaagctgcgggatgacagttacccggacccggccaggtggccc
gactgccgcaagaaactgctgctggccgccgaatggatggacgaagcggcggtatccacc
attcacggtttctgcaaccgcatgctcagcgaacacgccttcgacagcggcagcctgttc
aagctcaccctggaaacggaccagagcgaactgctggacgaggtggcaagggattactgg
cgcaccttcgtttaccccttaccaccggcccttatggacgaagccctgagccactggaaa
acccccaccgacctgcgcaaggcggtacgtaacctgatcgacgacccggatgctctgggt
acaccgccccagagcgtacacgaagccattgaccaggtggtcagcgaacggctcgcgcgg
gccggtgaactgaaagcccacccctgggcccagtggcaacaggaagtcactgacctgctg
aacgatctgaacaaaggcaagcgcctgcacggcggcagcaagaacgccatgctcaaggtg
tgggaatttctggtcgcctgggccgaatccgacgagctgttgccggagaagctggacagc
gctgccggttacaagaaccagacccccgagggtctggacaacatcctgaaaggcgacgac
caggcaccccatcacccggcgtttgacgccatcgacgccttgctggcattcggccagaac
ccacccagtgccaagtccgacatcctgcgccacgccagccactggattgccgggcggctg
gaagcggaaaagcagcagcgctcggaaatgggctttgatgacctgctcacccgcctggat
gacgcgctgcatggcccccgcggggaccaactggccgccaccatccgccgccagtttccg
gtggcgctgattgacgagtttcaggacaccgacccggtgcagtaccgcatctttaaccgg
atctataacgtcgaagccaaccaaccggacacctgcctgctgatgatcggcgatccgaaa
caggccatctacggtttccggggcgccgatatccacacctacctgcaggcccgcctgggc
gtgcaggcacgcacttacaccctgggcaagaacttccggtccgccgaaaccatggtgagc
gccgtcaaccgggtgtttgagcacagcgaccagttcagcgccaggggcgccttcctgttc
ggtaagggcgacagcacgccgctgccgttccagggcgtcgatgccaatggcaccaggcgg
ctgtggtcggtgcagggtgaagtccagcccagcctggtgttctgggcccacgaatccggt
gaaaccgacaaagagggcaacccaaaaggcctcgccaagggcgccgccacggctaaaatg
gccgaaacctgtgccagtgaaatcgcccgattgttgaccctggggcagggaaggcaggcc
ggctttgccttgccagacagcccgaatgacctcgaacccgttgaacccagagacattgcc
gtactggtgaataaccgcaacgaggccgctgcggtgcgggacgccctcggccggcggcgc
atcaagagtgtctacctgtcggaccgggattcagtattgacctcacgggaggcgaacgag
gtactgtgctggctgcgcgcctttgccgaaccccggcagttggccttcatccgggctgcg
ctggccacaccgaccctgggccagagctggcaggcactggatcggctgctcaccgacgag
ctgatactggaacgggaaatcgagcgcttccagcgctaccagcaacagtggcagagccag
ggcgtattgcccatgctgcggagctttctgatggacttcgaggttcctggccgcctgctt
cagcgttctgacggtgagcgaagactaactgacatcctgcacatcgccgaactgctgcag
caggacagcctgcaactggacggcgaacatgccctggtgcaccacttcacccagatcctg
cgggcggcagacgaagaagacgaacaccgcaccctgcgcctggaaagcgacgccggtctg
gtaaaggtaatcaccgtgcacaaatccaagggcctggaatacccgctggtattcctgccc
ttcggcaccgccttccgggcagagaacccgaagcaggcgtatgttcgctaccacgacgac
accggcaagctggtgaccgtgttcgatccgactccggaagacattgaaagggccgaccag
gaacgcctgggcgaagacatccgtaaactctatgtggccctgacgcgggcccggtttgcc
acctgggtgggcgcggcggctgtggataactggtatcagagcggcctgggctatgcgatt
gccggaacaccggagcagtccattagccaggctctggcctcactggcccagggccgcccg
gaaatccggatttccccgctgccggaagccggaaacacaatattcaccgaaatggccccg
gacgccctgggcccggcgctgatctccacgcgggaagcgaaggaagactggtggatcgcc
agctactccaccatcgaatacaccggcatgaccggcaccggtattaccttcaccggcgag
gtggaagacgcccagacccagaacctgctggaagaaagcgcccaggagcatgtggaagag
gcacccgccgtgcccgccatacgcaaccaccaccatttccccaagggcgccggccccggc
accttcctgcacgaattgctggagtggtgcacggcccagggcttccagcgggttgtggat
aatcctgagctgttacacgaacagctggcccgccgctgcggcacccggggctggggcgac
tgggtggaacccctgcaacactggctgctggcgctgatccgcaaaccgctgcggctggat
cgcgacggccgggaaaccgccagcctggcacagttggccaatctgcgcccggagctggag
ttctggtttgaaagccgtaacgtcagcatccataaactggacaaactggtcacccgttac
accctgaacggcgcggaccggccccgggccgaggccaaccgcttcaatggcatgctcaag
ggctttatcgacctggtgtttgaacacaaggggcagtattacgtgctggactacaaatcc
aatgctctgggcgaggacgacgacgcctacaccgaccaggccatgggccaggcgattctg
gacaaacgctacgacctgcaatacatcctctacctgctggccctgcaccggttgctgaag
gcccgtttaccgggatacgactacgaccagcacattggcggcgcggtgtacctattcctg
cgaggggtgaactccgccagcggcggcgcctttaccgacaagccccccagggtgctgatc
gaacaactggacgccctgttcgatggcgagccggtgtccggggaggtggctgcatga
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