KEGG   Mycobacterium intracellulare ATCC 13950: OCU_09290Help
Entry
OCU_09290         CDS       T02158                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mia  Mycobacterium intracellulare ATCC 13950
Pathway
mia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OCU_09290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mia03400]
    OCU_09290
Enzymes [BR:mia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCU_09290
DNA repair and recombination proteins [BR:mia03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OCU_09290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AFC42149
UniProt: H8ISV2
LinkDB All DBs
Position
911972..914251
Genome map
AA seq 759 aa AA seqDB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARVGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFNDSAEKGEVI
VNLHGSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEG
KWDGYRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVP
NFHEMQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDG
REALEHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGI
GSLLMGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYV
RPELVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatcctttttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgctggaggttcacgtcccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccggcccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcggcctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcgccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgtcggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaagacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaacaccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttcaatgactccgccgaaaaaggggaggtcatc
gtcaacctgcacggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgac
cagtggttggcacatcggatgaaggaccagaaggtcttcgagttcgacaccatcgcaccc
atgctggccacccacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggc
aaatgggacggttaccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcg
cgacgcggtcgcgaagtcacccaggaataccgcgaactgcgttggctggcagacgatctc
gccgaccatcacgtggtgctcgacggggaggctgtcgtcctggactcctccggggtgccc
aactttcacgagatgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgac
ctgctctacctcgacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactg
ctggaaatgttggccgccggcagcaggctcatcgtccccgacctactgcccggcgacggc
agggaggcgctggagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgc
gactccacctatcagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaac
acccaggaagtcgtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatc
ggctcactgctgatgggtatccccaccgcgggcggactgcacttcgccgggcgcgtcggc
accgggttcaccgaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacacc
gacgaatccccctttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtg
cggccggagctggtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgc
caatcgagttggcgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga

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