Mycobacterium intracellulare subsp. intracellulare: MIP_05585
Help
Entry
MIP_05585 CDS
T02325
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03030
DNA replication
mid03410
Base excision repair
mid03420
Nucleotide excision repair
mid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MIP_05585
03410 Base excision repair
MIP_05585
03420 Nucleotide excision repair
MIP_05585
03430 Mismatch repair
MIP_05585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mid03032
]
MIP_05585
03400 DNA repair and recombination proteins [BR:
mid03400
]
MIP_05585
Enzymes [BR:
mid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MIP_05585
DNA replication proteins [BR:
mid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MIP_05585
DNA repair and recombination proteins [BR:
mid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MIP_05585
NER (nucleotide excision repair)
GGR (global genome repair) factors
MIP_05585
MMR (mismatch excision repair)
DNA ligase
MIP_05585
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MIP_05585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFS15754
UniProt:
J9WER1
LinkDB
All DBs
Position
complement(4077418..4079499)
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVAPEVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDTMFNELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAQHLERMLSLDDVFDRDELVAWSNRVENEVGKEPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSAAKDFPTPSLLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFAPKTQHEAYAALKAWGLPVAEQTARVRGLAAVEERIGYWGEHRYDLEHEIDGVVVK
VDDVALQRRLGTTSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CDTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGAFDIEGLGYEAAIALLKAEVIA
DEGDLFTLTEDDLLRTELFRTKAGTLSANGRRLLDNLDKAKKVALWRVLVALSIRHVGPT
AARALATEFGDLDAIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDTSVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPVLDEDGFRRLLADGPQKTPAE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagcagaagctgattcggtagcgcccgaggtccggcggcagtggcaggacctg
gccgaagcggtccgggaacaccagttccgctactacatcaaggacgcgccgatcatctcg
gacgccgaattcgacacgatgttcaacgagctcctcgcgctggaggagcgccacccggag
ctgcgggtcgccgattcgccgacccagctggtcggcggcgcgggcttcgccaccgacttc
gccgaggcgcagcacctggaacgcatgctgagcctcgacgacgtcttcgaccgcgacgag
ctggtggcctggagcaatcgcgtcgagaacgaggtcggcaaggaaccgcattacctgtgc
gaactcaagatcgacggggtcgcgctctcactggtgtaccgcgacggccggctggaacgc
gccgcgacccgcggcgacggccgcgtcggtgaggacgtgacgctcaacgcgcgcaccatc
gacgacgtgcccgagcggctgtccgccgccaaggacttcccgacgccgtccctgctggag
gtgcgcggcgaggtgttcttcctgctcgccgatttcgaggcgctcaacgccagcctggtc
gaggacggcaaggccccgttcgccaacccgcgcaacagcgccgccgggtcgctgcgccag
aagaacccggccgtcaccgcccggcgcaagctgcggatgatctgccacggcatcggccgc
accgaagggttcgccccgaagacccagcacgaggcctacgccgcgctgaaggcctggggg
ctgccggtggccgaacagacggcacgcgtgcgcggcctcgccgcggtcgaggagcggatc
ggctactggggagagcaccgctacgacctcgagcacgagatcgacggcgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgcaggctcggcaccacgtcgcgcgcgccgcgctgggcc
gtcgcctacaagtacccgcctcaggaggcgcagaccaagctgctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcacgccctttgccttcatgacgccggtgaaggtggccggg
tccaccgtcgggctggccaccctgcacaacgccgcggaggtcaagcgcaagggcgtgctg
atcggagacaccgtgatgatccgcaaagccggcgacgtcatcccggaggtgctgggcccc
gtcgtcgacctgcgcgacggctccgaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcgacaccccgctggcaccggccaaggagggcgacgccgacatccgctgccccaatgcc
cggtcctgcccggcgcaactgcgggagcgggtgttccacgtcgcgggtcgcggggcgttc
gacatcgaggggctcggctacgaggccgccatcgcgctgctcaaggccgaagtgatcgcc
gacgagggcgacctgttcacgctgaccgaggacgacctgttgcgcaccgagctctttcgg
accaaggcgggcaccttgtccgccaacggcagacggctgctcgacaacctggacaaggcc
aaaaaggttgcgctgtggcgggttttggtggcgttgtccatccgccacgtcgggccgacg
gcggcgcgcgccctggcgaccgagttcggcgacctggacgccatcatgtcggcctcgacg
gagcggctcgcggcggtcgagggtgtgggcccgacgatcgccgccgcgctcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtcgacaagtggcgcgccgccggcgtgcggatg
gccgacgagcgcgacaccagcgtgccgcgcaccctcgagggcctgacggtggtggtcacc
gggtcgctcgccggcttttcgcgcgacgacgccaaggaggcgatcctggcgcgcgggggc
aaggccgccgggtcggtgtcgaagaagaccgactacgtcgtggccggggattcgccgggg
tcgaagtacgacaaggccgtcgagctgggggtgcccgtcctcgacgaggacggcttccgg
cggctgctggccgacggtccgcaaaaaacaccggcggaataa
DBGET
integrated database retrieval system
