KEGG   Mycobacterium paraintracellulare: OCQ_42600
Entry
OCQ_42600         CDS       T01755                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
mir  Mycobacterium paraintracellulare
Brite
KEGG Orthology (KO) [BR:mir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mir03400]
    OCQ_42600
Enzymes [BR:mir01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     OCQ_42600
    5.6.2.6  RNA 3'-5' helicase
     OCQ_42600
DNA repair and recombination proteins [BR:mir03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    OCQ_42600
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII AAA_25 PhoH Lhr_WH GST_C_2 DUF6406 AAA_22
Other DBs
NCBI-ProteinID: AFC55772
UniProt: A0A7I7TJ59
LinkDB
Position
4484208..4488812
AA seq 1534 aa
MSTRADSGPPGPADPLGRFSAVTREWFTGTFDAPTTAQAEAWEAIADGHHTLVIAPTGSG
KTLAAFLWALDSLAGAAGRPPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERRGLPP
PDISVGVRSGDTPPATRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHA
IAAGKRGAHLAVSLERLDALREDKPAQRIGLSATVRPPEELARFLSGGQPTTIVAPASAK
TVELTVAVPVPDMANLANNTIWPDVENRLVDLIEAHNSTIVFANSRRLAERLTARLNEIH
AERSGVELSTEANPKVAGGAPAHIMGSGQTYGAEAILARAHHGSVSKEQRALVEEDLKRG
LLKAVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSQGVLFPKHRT
DLIGCAVSVQRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADKWFDTVRRAAPFAT
LPRSVYEATLDLLSGKYPSTDFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGL
FTVYLASEAEKPSRVGELEEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPAR
LPFWRGDGVGRPAELGAALGAFTGELAGLTREEFETRCAGLGFDAYATDNLARLLDEQRT
AAGVVPTDTTLLVERFRDELGDWRVILHSPYGLPVNGPLALAVGRRLRERYGIDEKPTAS
DDGVVVRLPDTVSDFASDTGIETPPGADLFVFDADEIDPIVTDEVGGSALFASRFRECAA
RALLLPRRHPGRRSPLWQQRQRAAQLLEVARKYPDFPVVLETIRECLQDVYDVPALVALM
TGIAQRRVRVVEVETARPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELL
GRVELRDLLDPEVIAATARQLQHLSAERAARDAEGVADLLRLLGPLTEEEVAARAGGADV
GGWLEGLRAARRALTVSFAGRGWWVAIEDIGRLRDGIGIPVPLGVPTAFTGEVADPLGEL
LGRYARTHTPFTTAEVAARFGLGLRVTSDVLGRLAADGRLVRGDFVAETPGPSGGVAGAE
QWCDADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHHVGAAESPRAPGHSGLDGLMS
VIDQLAGVRIPASAIEPLVLAPRVRDYSPAMLDELLATGEVTWSGAGSISGSDGWIALHA
GESAPLTLGGPADIELGDAHRAILDTLAGGGAYFFRQLAHSGVPDAALKTALWELIWAGW
ITGDTFAPVRAVLGGAGARKRSAPAHRSQRPPRLSRYSVAHAQSRPADPTVAGRWSILAA
PEPDSTLRAHYQAELLLGRHGVLTRGAVATEGVPGGFATLYKVLSAFEDAGRCQRGYFIE
SLGGAQFAVASTVDRLRNFSEGVDPERPQYRAVVLAAADPANPYGAALPWPASGGEGARP
GRKAGALVVLVDGELAWFLERGGRSLLTFTDDPGAHHAAASALADLVASRRVAGMLVERI
DGVPALAPRAEASGPLGALTEAGFHTTPRGLRLR
NT seq 4605 nt   +upstreamnt  +downstreamnt
gtgagcactcgcgctgattccgggccgcccggccccgccgacccgctgggccggttcagc
gccgtcacccgagagtggttcaccggcaccttcgacgcgccgaccacggcgcaggccgag
gcctgggaggccatcgccgacggtcaccacactttggtgatcgcccccaccgggtccggc
aagacgctggcggcgttcctgtgggcgctggacagcctcgccggcgcggccggccgcccg
ccgggcacccgggtgctctacgtgtccccgctcaaggcgctggccgtcgacgtcgagcgc
aacctgcgcaccccgctggccgggctcacccgcatcgccgaacgccggggcctgccgccg
ccggacatcagcgtcggcgtgcgctccggcgacaccccgcccgccacccgccgccagctc
atcaaccggcctcccgacgtgctgatcaccacaccggagtcgctgtttttgatgctcacc
tccgcggcgcgcgagaccctggccggggtgcagacggtgatcgtcgacgagatccacgcc
atcgccgcgggcaagcgcggcgcgcacctggcggtgtcgctggagcgcctcgacgcgctg
cgggaggacaaacccgcccagcggatcgggctgtcggcgacggtgcggccacctgaggaa
ctcgcccggttcctgtccggggggcagccgaccacgatcgtcgcgccggcgtcggccaag
accgtcgagctcaccgtggccgtgccggtgcctgacatggcgaacctggcgaacaacacg
atctggcccgacgtggagaaccgcctggtcgacctgatcgaggcgcacaactcgacgatc
gtgttcgccaattcgcgtcggctggccgaacgacttaccgcccgcctcaacgagattcat
gccgagcgcagcggcgtcgagctatccacggaggccaacccgaaggtggcgggcggcgcc
ccggcccacatcatgggctccggccagacctacggggccgaggcgatactggcgcgcgcc
caccacggttcggtcagcaaggaacaacgcgccctggtcgaggaggacctcaaacgcgga
ctgctcaaggcggtggtggcgacctccagcctggagctcggcatcgacatgggcgccgtc
gatctggtgatccaggtggaggcgccgccgtcggtggccagcgggctgcaacgcatcggc
cgggccgggcaccaggtcggcgaggtctcccagggggtgctgttccccaagcaccgcacc
gacctgatcggctgtgcggtcagcgtgcagcgcatgctggccggccagatcgagacgatg
cgggtgccggccaatccgctcgacatcctggcgcagcagaccgtggcggccgccgcgctc
gagccgctggacgccgacaaatggttcgacacggtgcgccgggccgccccgttcgcgacg
ctgccgcgcagcgtgtacgaggccaccctggacttgttgagcggcaagtacccctccacc
gatttcgccgagctgcgtccgcggctcgtctacgaccgcgataccggcacgctgaccgcg
cgccccggcgcgcaacgcctggcggtgacctccggcggcgccatccccgaccgggggctg
ttcacggtgtatctggcctccgaggccgaaaagccttcgcgggtcggcgaactcgaagag
gaaatggtctacgagtcccgccccggcgacgtcatctcgctgggcgccaccagctggcgc
atcaccgagatcacccacgaccgggtgctggtgatcccggcgcccggccagccggcccgg
ttgccgttctggcgcggcgacggggtcggccgcccggccgagctgggcgccgcgctgggc
gcgttcaccggtgagctggccgggctcacccgggaggaattcgaaacccgctgcgccgga
ctgggtttcgatgcctacgccaccgacaacctggcccgcctgctcgacgagcagcgtacc
gccgccggggtggtgcccaccgacaccaccctgctcgtcgagcggttccgcgacgagctc
ggcgactggcgggtgatcctgcactcgccctacgggctgccggtgaacggtccgctggcg
ctggcggtgggacggcggctgcgggaacgctacggcatcgacgagaagcccaccgcctcc
gacgacggcgtcgtggtgcgcctgcccgacaccgtgtccgatttcgcgtcggacacgggg
atcgaaaccccgcccggcgcggaccttttcgtcttcgacgccgacgagatcgaccccatc
gtcaccgacgaggtgggcggctcggcgctgttcgcatcgcggttccgcgaatgcgcggcg
cgcgccctgttgttgccgcgccggcacccgggccgccgctcgcccctgtggcagcagcgc
cagcgcgcggcccagttgctcgaggtggcccgcaaataccccgacttccccgtcgtgttg
gagaccatccgcgaatgcctgcaggacgtctacgacgtccccgccctggtggcgctgatg
accggcatcgcccagcgcagggtgcgggttgtcgaggtggaaacggcgcggccctcgccg
ttcgcggcctcgctgctgttcggctacgtcggcgcgttcatgtacgagggcgacagcccg
ctggccgagcgccgcgccgccgcgctctcgctggacagcacgctgctggccgagctgctg
ggccgggtggaactgcgcgacctgctcgaccccgaggtcatcgccgccaccgcccgccag
ctgcagcacctctctgcggaacgggccgcgcgcgacgccgagggcgtcgccgacctgctg
cggctgttgggcccgctgaccgaggaggaggtggccgcccgcgcgggtggcgccgacgtg
gggggctggctggagggcctgcgcgcggcgcggcgcgcgctgacggtgtcgttcgccggc
cgcggctggtgggtggccatcgaggacatcgggcggctgcgcgacggcatcggcatcccg
gttccgctgggcgtgccgacggccttcaccggggaggtcgccgatcccctgggcgaattg
ctgggccgctacgcgcgcacccacaccccgttcaccacggccgaagtggcggcccgattc
ggcctggggctgcgggtgacctccgatgtcctgggccggctggccgccgacgggaggctg
gtgcgcggcgacttcgtcgccgagaccccggggccgtccggcggtgtcgccggggccgag
cagtggtgcgatgccgacgtgctgcgcatcctgaggcggcggtcgctggcggcgctgcgg
gcccaggtcgagccggtcagcaccgccgcctacgggcgcttcctgcccgcctggcatcac
gtgggggcggccgaatcgccgcgcgcccctggccattccgggctggacgggctgatgtcg
gtgatcgatcagctggccggcgtgcggatccccgcttcggcgatcgagccgctggtgctg
gccccccgggtccgcgactactcccccgcgatgctcgacgaattgctggccaccggcgag
gtcacctggtcgggcgccgggtcgatctcgggtagcgacggctggatcgcgctgcacgcc
ggcgaatccgcgccgctgacactgggcgggcccgccgacatcgagctcggcgacgcccac
cgcgccatcctggacacgctcgccgggggcggcgcctacttcttccgccaactcgcgcac
agcggggtgcccgacgccgcgctcaaaaccgcgctgtgggaactgatctgggccggctgg
atcaccggcgacacgttcgccccggtgcgcgccgtcctcggcggcgccggcgcgcgcaag
cgctcggcgcccgcgcaccgctcgcaacgcccgccccggctgagccggtacagcgtcgcg
cacgcgcagtcccggcccgccgaccccaccgtcgccggccgctggtccatcctggcggcc
cccgagccggattccacgctgcgcgcccactaccaggccgagctgttgctgggccgccac
ggcgtgctgacccggggcgcggtggccaccgagggcgtccccggcgggttcgccaccctg
tacaaggtgctgagcgccttcgaggacgcgggccgctgccagcgcggctacttcatcgag
tcgctgggcggggcgcagttcgccgtcgcgtcgaccgtcgatcggctgcgcaacttcagc
gagggggtcgatccggaacggccgcagtaccgggcggtggtgctggccgccgcggacccg
gccaacccgtacggcgcggcgctgccctggcccgcctccggcggcgagggcgcgcgcccc
ggccgcaaggccggcgcgctcgtcgtgctggtcgacggcgagctggcctggttcctggaa
cgcggtgggcgctcgctgctgacattcaccgacgatcccggggcccaccacgcggcggcg
tcggccctggccgacctggtcgcctcccgccgcgtggcggggatgctggtggagcgcatc
gacggggtgccggccctggcgccccgcgcggaggcgtccggcccgctgggcgccctcacc
gaggccggattccacacgacgccacgcggactgcggctgcgctga

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