KEGG   Mycobacteroides immunogenum: BAB75_05505Help
Entry
BAB75_05505       CDS       T04755                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
miz  Mycobacteroides immunogenum
Pathway
miz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:miz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BAB75_05505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:miz03400]
    BAB75_05505
Enzymes [BR:miz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAB75_05505
DNA repair and recombination proteins [BR:miz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAB75_05505
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANO02919
UniProt: A0A0N0KNJ7
LinkDB All DBs
Position
1106744..1109083
Genome map
AA seq 779 aa AA seqDB search
MERISPVWPTGAAESATSGPGATAFVRLSNAEKVLYPARGAAAATTKADVFGYYTAIAPF
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLAASAPEWLPRRRIEHKSRYVTYPLIDTSVAL
AWIAQQAALEVHVPQWRFVGENPGPATRLVFDLDPGEGVTMPQLALVARAVRDVLADIGL
TTFPLTSGSKGLHLYVPLAQPVSSSGAVAVAKKVAVQLEQTMPDLVTATMTRQLRAGKIF
VDWSQNSGSKTTVAPYSLRGRETPTVAAPRTWEELDDPALRQLRYDEVLTRAERDGDLLA
GLDDAEVSGDRLSVYRSMRDPARTPEPVPAVKPEAGQDNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPLEPAVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGEVTIWDSGTYDTE
KFIDPHDDDEAKGEVIVTLHGRRITGRYALIRTNGKQWLAHRMKDQRSAASMPVGAAPML
PTAGSVAGLDADEWAFEGKWDGYRLILECDRGQLRALARSGRDVTAEFPALRRLAHELAD
HRVVLDGEVVVLDHKGLPSFALLQNRTAGTDTEFWAFDLLYLDGKSLLRTKYRDRRRLLE
VLGSGTESMTVPDLLSGDGVAALAYSHDHGWEGVVAKRLDSTYGPGRTRSWIKAKNWSSQ
EVVIGGWRKGQGGRSSGIGALLMGIPFQDGLRYAGRVGTGFTEKELAALKERLEPLHRAE
SPFSAELSAVEAKDVQFVEPVLVAEVRYGDRTPGGILKHSSWRGLRPDKSVRDVELDLG
NT seq 2340 nt NT seq  +upstreamnt  +downstreamnt
atggaacgcatatccccagtatggcccaccggagccgcggagtcggcgacatccggcccg
ggggcgaccgcgttcgtccgactgtccaatgcggagaaagtgctgtatccggccaggggt
gccgccgcggccaccaccaaggcggatgtcttcggctactacaccgcgatcgcacctttc
atgctgccgcacatcgcgggtcgtccggtgacccgcaagcgatggcccaacggcgttgat
cagccatccttcttcgagaaggacttggccgcttcggcgcccgagtggcttccgcgacgg
cgcatcgagcacaagtcccgctatgtcacctacccgctgatcgatacctcggtggccctg
gcgtggatcgcgcagcaggcggcccttgaggtgcacgtgccacagtggcggttcgtaggt
gaaaatccgggtccggcaacccgattggtcttcgacctggatccgggggagggtgtgacc
atgccgcagctggcgctggtcgccagggccgtacgcgatgtgctcgccgatattggcctg
acgacgtttcccttgaccagcgggagtaagggtctgcacctgtatgtgccgctggcgcaa
ccggtcagctcatccggtgcggtggccgtggcgaagaaggtcgccgttcagctggagcag
accatgcccgacttggtgactgccaccatgacccgacagctgcgcgcgggcaagattttt
gtggactggagccagaacagcggttccaagacgacggtggctccgtactcgctgcgcggc
cgtgagacgccgaccgtcgccgcgccgcgcacgtgggaagagctggatgaccccgcgttg
cgccagttgcgttacgacgaagtgctgacgcgggccgagcgtgacggcgatctgctggcg
ggcctcgacgacgcggaggtctccggggacaggctgtctgtctaccgcagcatgcgtgac
cccgcgcgcacgccagaacccgtcccggcagtgaaaccggaagccggacaggataattca
tttgtcattcaggagcatcacgccaccgcgctgcactatgactttcggctggagcgtgat
ggtgtgctggtctcgtgggcggtgcccaagaatctgcccctggagccggcggtcaaccat
ctcgcggtgcacaccgaggaccacccgctggagtacgggggtttcgaaggcgtcatcccg
aagggcgagtatggggccggtgaggtgaccatctgggactcgggtacctacgacaccgag
aagttcatcgatccgcacgacgatgacgaagccaaaggtgaggtcatcgtcacgctgcac
ggtcggcgaatcacgggacggtacgcgctgattcgaacgaacggcaagcagtggctggcg
caccggatgaaggatcagcgatctgctgcctcgatgcccgtcggcgccgcgccgatgcta
ccgaccgctggatcggtggcgggccttgatgccgatgaatgggcgtttgaaggcaagtgg
gacggctaccggctcattctggagtgcgaccgcggacagctgagagcgctggcgcgcagt
gggcgcgacgtgaccgccgaattcccggcactgcggcgacttgcccacgaattggccgac
catcgcgtggtgctcgacggggaagtggtggtgcttgatcacaagggcctacccagcttt
gcgctgctacaaaatcggaccgcgggcacagacacagagttctgggcgttcgatctgctg
tatttggacggaaagtccttgctgcgcaccaagtatcgcgaccgtcgccggctgcttgag
gtgctggggtctggtaccgaatcgatgacagttccggatctactgtccggcgacggcgtc
gcggctctcgcgtactcgcatgaccacggttgggaaggggtggtcgccaagaggctcgac
tccacctatggacctggccgcacgcggtcctggatcaaggcgaagaactggagcagccaa
gaggtcgtcatcggtggctggcgcaaggggcagggtgggcgcagtagcggaataggggca
ctgctcatggggataccgttccaggacggactgcgctacgccgggcgggtgggcaccggt
ttcacggagaaggaactcgccgcgctcaaggaacgattggagccgctgcaccgcgccgaa
tcgcccttcagcgcagagctgtccgcggtcgaggccaaggacgtgcagttcgtcgagccg
gtactggtcgccgaggtccgctacggcgatcgcacgcccggcggaatcctgaagcactcc
agctggcgtggtctgcgccccgacaagtcagttcgcgacgtcgagctcgatctcgggtag

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