KEGG   Mycolicibacter sinensis: JDM601_0881Help
Entry
JDM601_0881       CDS       T01512                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mjd  Mycolicibacter sinensis
Brite
KEGG Orthology (KO) [BR:mjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    JDM601_0881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mjd03400]
    JDM601_0881
Enzymes [BR:mjd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JDM601_0881
DNA repair and recombination proteins [BR:mjd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     JDM601_0881
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Methyltransf_24
Motif
Other DBs
NCBI-ProteinID: AEF34881
UniProt: F5YT53
LinkDB All DBs
Position
947664..949940
Genome map
AA seq 758 aa AA seqDB search
MAAQPFQTRVKLTNADKVLYPATGTTKAQVYHYYTRIAEVMLPHIAGRPVTRKRWPNGVA
QDSFFEKQLASSAPAWLPRAEVQHRSGITAYPIIDDLDGLAWIAQQAALEVHVPQWRFEA
EWTGGGRVLKPGPASRLVFDLDPGEGVSMSQLAQVARAIRDLMAELDLDTFPVTSGSKGI
HVYAALDRPVASAGAVAVAKRVAQQLESAMPKLVTATMAKKLRAGKVFVDWSQNNASKTT
IAPYSLRGRDHPTVAAPRSWAELDDPDLRQLRFDEVLERVEHDGDLLAGLDGPLEGQDRL
AVYRAKRDAGRTPEPVPAAAPAAGEGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PTTTSVNHLAVRTEDHPLEYGGFEGTIPKGEYGAGTVRIWDSGSYVTEKWQDTSEKGEVI
VVLRGDRISGRYALIRTGGDQWLAHRMKDQQTFAFTDLAPMLATHGSVSGLDPKVWAFEG
KWDGYRLLVEADRGRVRLRARSGRDVTGEYPQLQTLAAELTEHHVVLDGEVVALDAAGVP
SFAAMQNSARSTRVKFWAFDLLYLDGRPLLRAAYRDRRRLLATLAQGTGLVVKDLLAAGG
AEALEQSRRLGWEGVIAKKWDSPYQPGRRSPAWVKDKHWRTQEVVIGGWRAGEGARGGGI
GSLLMGIPEGDGLRFVGRVGTGFTERALAALKKELTPTDESPFDAPLPRADAKGVTFVRP
TLVGEVRYSERTADGRLRQPSWRGLRPDKTPDDVVSED
NT seq 2277 nt NT seq  +upstreamnt  +downstreamnt
atggctgcacagccgttccagacccgggtgaagttgaccaacgccgacaaggtgctctac
cccgccacgggcaccaccaaggcgcaggtctaccactactacacacgtatcgcggaggtg
atgctgccgcatatcgcgggacggccggtgacccgcaaacgctggcccaacggcgtggca
caggactccttcttcgaaaagcagctcgcctcctcggcgccggcctggctgccccgcgcc
gaggtgcagcaccgctccggtatcaccgcctatccgatcatcgacgacctcgacggcctg
gcctggatcgcccagcaggccgcacttgaagtccacgtgccgcagtggcgtttcgaggct
gaatggacgggcggcggccgggtgctcaagccgggcccggcaagtcgtctggtgttcgac
ctggaccccggggagggggtgtcgatgagccagctggcccaggtggcgcgcgcgatccgc
gacctgatggccgagctggacctggacacattccccgtgaccagcggtagcaagggaata
cacgtgtacgcggctctggaccggccggttgccagcgccggggcggtcgcggtggccaaa
cgcgttgcgcaacaactcgagagcgccatgccgaagctggtgaccgcgaccatggccaaa
aagctgcgggccggaaaggttttcgtggactggagccagaacaacgcctcgaagaccacc
atcgcgccgtactcgctgcgcggccgagaccatccgacggtcgccgccccgcgcagttgg
gccgaactggatgacccagacctgcggcagctgcgctttgacgaggtgctggagcgcgtt
gagcacgacggcgatctgttggccggcctggatggacccctggaaggtcaagatcgactt
gcggtgtaccgggccaagcgtgacgcgggccgcacgcccgaaccggtgccggccgcggcg
ccggcggcaggtgagggcaacagtttcgttatccaggagcatcatgcccgccggctgcac
tacgacttccggctggagcgcgacggggtgttggtgagttgggcggtgcccaagaacctg
ccgacgacgacgtcggtcaaccatctggcggtgcgcaccgaggaccatccgctggagtac
ggcggcttcgagggcaccatccccaagggtgagtacggcgccggcacggttcgtatctgg
gattcgggcagctacgtgaccgagaagtggcaggacacgtccgaaaagggggaggtgatc
gtcgtgttgcgcggcgatcggatctcgggccgctacgcgctgatccggaccggcggagat
cagtggctggcgcaccggatgaaggatcagcagacgttcgcgttcaccgacctggccccc
atgctggccacccacggttcggtgagtgggctggacccgaaagtctgggccttcgaaggc
aagtgggacggctaccgactgctggtcgaggccgaccgcggccgggtccggttgcgggca
cgcagcgggcgcgacgtgaccggcgaatacccgcagctgcagacactggccgcagagctc
accgagcaccacgtcgtgttggacggcgaagtcgtcgcactcgatgccgccggcgtgccc
agttttgcggcgatgcagaacagcgcccgctccacccgcgtgaagttctgggccttcgac
ctgctctacctcgacgggcgtcctttgctgcgcgcggcctaccgggaccgccgccggctg
ctggcaacgcttgcccagggaaccggcttggtggtcaaagacctgctggccgccggcggc
gccgaggcactcgagcagtctcgccggctcggctgggaaggggtgatcgccaagaagtgg
gactcgccctaccagccggggcgccgctcaccggcgtgggtcaaggacaagcattggcgg
acccaggaggtggtgatcggcggctggcgcgccggcgagggtgctcggggcggggggatc
gggtcgctgttgatggggattcccgagggcgacggtctgcggttcgtgggccgggtgggc
accggcttcaccgagcgcgcactggcagcgctgaagaaggagctgacgcccaccgatgaa
tcgcccttcgatgcgccgctgcctcgcgctgatgccaagggcgttaccttcgttcgaccg
acgctggtgggggaggtgcgctacagcgagcggaccgccgacggccggctgcggcaaccg
agctggcgcggcttgcggcccgacaagacgcccgacgacgtggtgagtgaggattga

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