Mycolicibacter sinensis: JDM601_0983
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Entry
JDM601_0983 CDS
T01512
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd (TrcF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mjd
Mycolicibacter sinensis
Pathway
mjd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JDM601_0983 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjd03400
]
JDM601_0983 (mfd)
Enzymes [BR:
mjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JDM601_0983 (mfd)
DNA repair and recombination proteins [BR:
mjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JDM601_0983 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AEF34983
UniProt:
F5YTW0
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All DBs
Position
1054241..1057912
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AA seq
1223 aa
AA seq
DB search
MTAPGHASPATPIAGLVEAALSAPTFVDLIERADSRPAELNLVGPAATRPFAAAAVARNT
PLLVVTATGHEADDLAAELRGVYGDTVALFPSWETLPHERLSPGVDTVGARMLLLRRLAR
PDDAHLGPPLRVVVTTARSLLQPMTPHLDAIEPVTLTVGEETPFEAVIARLVELAYTRVD
LVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEITEMRPFSVADQRSIPEIDAGTVVAV
ACRELLLTDDVRARAAQLAGDHPRTDNTVTGGVGDMLAKLAEGIPVDGMEALGSVLRPGP
QALLTDQLAAGTPVLICDPEKVRARAGDLIKTGREFLEASWSVAAIGGDAPIDVEQLGGS
GFRDLAEVRKAALDAGHPWWTLSQLPDPEAIELEVRPSPSARGRQRDIEAIFAMLRAHTA
TGGAAAIVTPGVGTARRLVEQLAESETAATLLEPGAAPQPGVVGVLQGPLHDGVVIGGAN
LVIVTETDLTGNRVAGPEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTERTVG
GARREYLVLEYASGKRGANGTDKLYVPMDSLDQLSRYVGGQAPGLSKLGGSDWSQTKTKA
RKAVREIADELVALYAKRQAAPGHAFAPDTPWQAEMEDAFGFTETVDQLTAIGEVKADME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLADQHLQTFTTRMAGFP
VTVKGLSRFTDPKESKAVIDGLADGSVDVVIGTHRLLQTGVAWKNLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGPHDDKQ
VAAALRRELLRDGQIFYVHNRVSSIDAAAARVRALVPEARVVVAHGQMPEELLETTVQGF
WNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
RDTPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAYRGDLVTTEEPKDVRIDLPVDAHLPPEYINSDRLRLEAYRRLAAAPDD
AAISAVVEELTDRYGPLPEPAGRLVAVARLRLLCRSVGITEVSVASATTLKLAPMTLPDS
AQLRLKRLHPSASYRATTATVQVPIPRAGGAGAPVGAPRIRDVELVQMVADLISALDGKP
AGRLDMAGAAPATRDHATAAGRR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacgccagcccagccaccccgatcgcggggctcgtcgaagccgca
ctgagcgcgccgaccttcgtcgatctcatcgagcgcgccgacagccggcccgctgaactc
aacctggtgggcccggccgcgaccaggcctttcgccgccgccgcagtggcccgcaacacc
ccgctgctggtggtcaccgccaccggccacgaggccgacgacctggctgccgagctgcgc
ggcgtctacggcgacaccgtggcgctgttcccgtcctgggagacgctgccgcacgagcgg
ctctccccgggggtggacaccgtcggagcccggatgctgctgctgcgccggctggcacgg
cccgacgacgcgcacctgggaccgccgctgcgcgtggtggtcaccacggcccggtcgctg
ctgcagccgatgaccccgcacctggatgcgatcgagccggtcaccctgaccgtcggcgag
gagacccccttcgaggcggtgatcgcccggctggtcgagctggcctacacccgggtggac
ctggtcggcagacgcggtgagttcgcggtgcgcggcggcatcctcgacgtgttcccgccg
accgccgagcacccggtgcgcatcgagttctggggcgacgagatcaccgagatgcggccg
ttctccgtggcggatcaacgctccatccccgagatcgacgccggcaccgtggtcgcggtg
gcctgccgggagctgctgctcaccgacgatgtccgcgcccgcgccgcgcaactggccggc
gatcacccgcgcaccgacaacaccgtcaccggcggtgtcggcgacatgctcgccaaactc
gccgagggcatcccggtcgacggcatggaggccctcggctcggtgctgcggcccggaccg
caggcactactgaccgatcagctggcggccggcaccccggtgctgatctgcgacccggaa
aaggtccgcgcccgcgccggcgacctgatcaagaccggccgcgagttcctggaggcgtcc
tggtcggtcgccgcgatcggtggtgacgcgccgatcgacgtcgagcagctgggaggttcg
ggattccgcgacctcgccgaggtgcgcaaggcggcgctggacgccgggcatccgtggtgg
acactgagccagctgcccgacccggaggcgatcgaacttgaggtgcgcccgtcaccctcg
gcgcggggccggcagcgcgacatcgaagcgatcttcgccatgctgcgggcgcacaccgcg
accggcggagccgcggcgatcgtgacccccggcgtgggcaccgcccgcagactggtcgag
cagctggccgaatccgagaccgcggcaacgctattggagcccggtgcggccccgcaaccc
ggcgtggtcggggtcttgcagggcccgctgcatgacggcgtggtgatcggcggcgccaac
ctggtgatcgtcaccgagaccgacctgaccggaaaccgggtcgccggaccggagggcaag
cggctggcggccaagcgccgcaacgccgtcgacccgctggcactgaccgccggtgacctg
gtggtgcacgaccagcacggcatcggcaagttcgtggagatgaccgagcgcaccgtgggc
ggggcgcggcgtgaatacctggtgctggagtacgcctcgggcaagcgcggcgccaacggt
accgacaagctctacgtgccgatggactcgctggatcagctgtcgcgctacgtcggcggc
caggccccggggctgagcaagctcggcggcagcgactggagccagaccaagaccaaggcg
cgcaaggcggtccgggagatcgccgacgaactcgtcgcgctctacgccaaacggcaggcc
gcgcccggccacgcgttcgccccggacaccccgtggcaggccgagatggaggacgcgttc
gggttcaccgagaccgtcgaccagctcaccgcgatcggcgaggtcaaggccgacatggaa
aagccggtcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggccgtccaggacggcaggcaggtcgcggtgctggtgccc
accacactgctggccgatcagcatctgcagacgttcaccacccggatggctggcttcccg
gtcaccgtcaagggcctgtcgcgcttcaccgatccgaaggagtccaaggcggtgatcgac
ggcctggccgacgggtctgtcgacgtggtgatcggcacccaccggctgctgcagaccggg
gtggcctggaagaacctcggcctggtgatcgtcgacgaggagcaacggttcggcgtcgag
cacaaggagcacatcaaagcgttgcggacccacgtggacgtgctcaccatgagcgccacc
ccgatcccgcgcaccctggagatgagtctggccggcatccgggagatgtcgacgatcctc
accccgcccgaagaccgctacccggtgctgacctatgtcggcccgcacgacgacaagcag
gtggcggcggcgttgcgccgcgaactgctgcgcgacggccagatcttctacgtgcacaac
cgggtcagttccatcgacgccgccgccgcccgggtgcgcgcgctggtgcccgaggcccgc
gtcgtggtggcgcacggccagatgcccgaggagctgctggagaccaccgtgcagggtttc
tggaaccgcgaatacgacatcctggtgtgcaccacgatcatcgagaccggtctggacatc
tccaacgccaacaccctgatcgtcgaacgcgccgacaccttcgggctctcccagctgcac
cagctgcggggtcgggtcggccgcagccgggaacgcggctacgcctacttcctctacccg
cgggacacgccgctgaccgagaccgcccacgaccggctggccaccatcgcccagaacaac
gaactcggcgccgggatggcggtggcgatgaaggacctggagatccgcggcgccggcaac
gtgttgggcgtggagcagtccgggcacgtcgccggggtggggttcgacctgtatgtccgg
ttggtcggtgaggccgtcgaggcctatcgggcggcctatcggggcgatctcgtcaccacc
gaggagcccaaggacgtccggatcgatctgccggtcgacgcccacctgccgccggagtac
atcaactccgaccggttgcggttggaggcctaccgccggctggccgccgcccccgacgat
gccgcgatcagcgccgtggtcgaggagctgaccgaccgctacgggccgctgccggagccg
gcgggccgactggtcgcggtggcccggttgcggctgctgtgccgcagtgtcggtatcacc
gaggtcagcgtggcctcggcgaccaccttgaagctggccccgatgacgttgccggactcc
gcccagttgcgcctcaagcggctacacccgtcggccagctaccgcgccaccaccgccacc
gtgcaggttccgatacctcgcgccggcggtgccggggcgcccgtcggtgcgccgcgcatc
cgcgacgtcgagctggtgcagatggtggccgacctgatctcggcgttggacggaaaaccc
gcgggccggctcgacatggcgggagcggcgccggccactcgggaccacgccacggcggcc
ggtcgacgatga
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