Mycolicibacter sinensis: JDM601_1320
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Entry
JDM601_1320 CDS
T01512
Symbol
alkA
Name
(GenBank) Ada regulatory protein AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mjd
Mycolicibacter sinensis
Pathway
mjd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JDM601_1320 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mjd03000
]
JDM601_1320 (alkA)
03400 DNA repair and recombination proteins [BR:
mjd03400
]
JDM601_1320 (alkA)
Enzymes [BR:
mjd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
JDM601_1320 (alkA)
Transcription factors [BR:
mjd03000
]
Prokaryotic type
Helix-turn-helix
AraC family
JDM601_1320 (alkA)
DNA repair and recombination proteins [BR:
mjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JDM601_1320 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AEF35320
UniProt:
F5YWN3
LinkDB
All DBs
Position
complement(1409415..1410920)
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AA seq
501 aa
AA seq
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MHDDFDRCYRAVQSSDARFDGWFYTAVLTTRIYCRPSCPVRPPLPRNVRFYPTAAAAQRA
GFRACKRCRPDAAPGSPEWNVRGDIVGRAMRLVADGTVDREGVTGLAGHLGYSTRQLQRL
LHNEVGAGPLALARAQRAQTARILIETTDLPLSDIAFAAGFASIRQFNDTVRAVWATTPT
ALRQHAAARFKAESDRRPPSPGGLSLRLPVRTPFAFEGVFGHLAACAVPGCEEVRDGAYR
RTLRLPHGNGIVSLTPAPDHVRCELVLDDFRDLTAAITRCRRLLDLDADPEAVVEALTDD
PELAPLVAKAPGQRIPRTVDEAELAVRAVLSQQVSVKAARTHTRRLLLGHGEPIVDPSGG
LTHVFPSVERLADIDADRLALPRARRRTLLALVAGLADGSISLGAGCDWGRARKSLLELP
GVGAWTAELIAMRGLGDPDAFPATDLGVRVAVRRLGLPEQPRALTERSLRWRPWRSYATQ
HLWTALDHAVNDWPRTSKEIA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgacgacttcgaccgctgctatcgtgccgtgcagtccagcgacgcccgcttcgac
ggctggttttacaccgcagtgctgaccacccggatctactgccggcccagttgcccggta
cggccaccgctgccacggaacgtgcggttctaccccaccgccgccgccgctcagcgggca
ggcttccgggcctgtaaacgctgccggccagacgccgcaccgggatcgccggaatggaac
gtccgcggcgacatcgtgggccgggcgatgcggttggtcgccgacggcacggtcgaccgc
gagggggtgacggggcttgccggccacctcggctactccacccgccagttgcagcgcctg
ctccacaacgaggtcggagccggtccgctggcgctggcccgcgcccagcgcgcgcagacg
gcccggattttgatcgagaccacggatcttccgttgagcgacatcgcgtttgcggccggc
ttcgccagcatccgacagttcaacgacaccgtccgcgcggtgtgggccaccacgccgacg
gcattgcggcaacacgcggccgcccggttcaaggccgaatccgaccggcgccccccgagc
ccgggagggctgtcgctgcgtctgccggtgcgcaccccgttcgcattcgagggggtcttc
ggccatctggcggcctgcgcggttcccggttgcgaggaggtgcgtgacggcgcgtaccgc
cgcaccctgcgactgccgcacggcaacggcatcgtcagcctgactccggcccccgaccac
gtccgatgcgagctggtgctcgacgatttccgggatctcaccgcggcgatcacccgctgc
cggcgactgctggacctcgacgccgatccggaggccgtcgtcgaggctctcaccgacgac
cccgaactggcgccgctggtggccaaggcgccgggccagcgaatcccccgcaccgtcgac
gaagccgaactggcggtgcgggcggtgctcagccagcaggtgtcggtcaaggcggcccgc
acccatacgcggcggttgctgctgggccacggcgaacccattgtcgacccgagcggcggg
ctgactcacgtcttcccgtcggtcgaacggctggccgatatcgacgccgaccggctggcg
ctgccccgggcacgtcggaggacgctgctggccctggtggcaggcctcgccgacggcagc
atcagcctgggcgcgggctgcgattggggccgggcccggaagtcgttgctggagcttccc
ggcgtcggcgcgtggactgccgaactcatcgccatgcgcggcctgggcgaccccgatgcg
ttcccggcgaccgatctgggggtgcgggtggccgtgcgccggctgggtttacccgagcag
ccgcgggccctgaccgaacgcagtcttcgctggcgcccgtggcggtcgtatgccacccag
catctgtggaccgcactcgatcacgccgtgaacgactggccccggacctccaaggagatc
gcatga
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