KEGG   Mycolicibacter sinensis: JDM601_1320
Entry
JDM601_1320       CDS       T01512                                 
Symbol
alkA
Name
(GenBank) Ada regulatory protein AlkA
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
mjd  Mycolicibacter sinensis
Pathway
mjd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    JDM601_1320 (alkA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mjd03000]
    JDM601_1320 (alkA)
   03400 DNA repair and recombination proteins [BR:mjd03400]
    JDM601_1320 (alkA)
Enzymes [BR:mjd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     JDM601_1320 (alkA)
Transcription factors [BR:mjd03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    JDM601_1320 (alkA)
DNA repair and recombination proteins [BR:mjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     JDM601_1320 (alkA)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC HhH-GPD DUF6233
Other DBs
NCBI-ProteinID: AEF35320
UniProt: F5YWN3
LinkDB
Position
complement(1409415..1410920)
AA seq 501 aa
MHDDFDRCYRAVQSSDARFDGWFYTAVLTTRIYCRPSCPVRPPLPRNVRFYPTAAAAQRA
GFRACKRCRPDAAPGSPEWNVRGDIVGRAMRLVADGTVDREGVTGLAGHLGYSTRQLQRL
LHNEVGAGPLALARAQRAQTARILIETTDLPLSDIAFAAGFASIRQFNDTVRAVWATTPT
ALRQHAAARFKAESDRRPPSPGGLSLRLPVRTPFAFEGVFGHLAACAVPGCEEVRDGAYR
RTLRLPHGNGIVSLTPAPDHVRCELVLDDFRDLTAAITRCRRLLDLDADPEAVVEALTDD
PELAPLVAKAPGQRIPRTVDEAELAVRAVLSQQVSVKAARTHTRRLLLGHGEPIVDPSGG
LTHVFPSVERLADIDADRLALPRARRRTLLALVAGLADGSISLGAGCDWGRARKSLLELP
GVGAWTAELIAMRGLGDPDAFPATDLGVRVAVRRLGLPEQPRALTERSLRWRPWRSYATQ
HLWTALDHAVNDWPRTSKEIA
NT seq 1506 nt   +upstreamnt  +downstreamnt
gtgcacgacgacttcgaccgctgctatcgtgccgtgcagtccagcgacgcccgcttcgac
ggctggttttacaccgcagtgctgaccacccggatctactgccggcccagttgcccggta
cggccaccgctgccacggaacgtgcggttctaccccaccgccgccgccgctcagcgggca
ggcttccgggcctgtaaacgctgccggccagacgccgcaccgggatcgccggaatggaac
gtccgcggcgacatcgtgggccgggcgatgcggttggtcgccgacggcacggtcgaccgc
gagggggtgacggggcttgccggccacctcggctactccacccgccagttgcagcgcctg
ctccacaacgaggtcggagccggtccgctggcgctggcccgcgcccagcgcgcgcagacg
gcccggattttgatcgagaccacggatcttccgttgagcgacatcgcgtttgcggccggc
ttcgccagcatccgacagttcaacgacaccgtccgcgcggtgtgggccaccacgccgacg
gcattgcggcaacacgcggccgcccggttcaaggccgaatccgaccggcgccccccgagc
ccgggagggctgtcgctgcgtctgccggtgcgcaccccgttcgcattcgagggggtcttc
ggccatctggcggcctgcgcggttcccggttgcgaggaggtgcgtgacggcgcgtaccgc
cgcaccctgcgactgccgcacggcaacggcatcgtcagcctgactccggcccccgaccac
gtccgatgcgagctggtgctcgacgatttccgggatctcaccgcggcgatcacccgctgc
cggcgactgctggacctcgacgccgatccggaggccgtcgtcgaggctctcaccgacgac
cccgaactggcgccgctggtggccaaggcgccgggccagcgaatcccccgcaccgtcgac
gaagccgaactggcggtgcgggcggtgctcagccagcaggtgtcggtcaaggcggcccgc
acccatacgcggcggttgctgctgggccacggcgaacccattgtcgacccgagcggcggg
ctgactcacgtcttcccgtcggtcgaacggctggccgatatcgacgccgaccggctggcg
ctgccccgggcacgtcggaggacgctgctggccctggtggcaggcctcgccgacggcagc
atcagcctgggcgcgggctgcgattggggccgggcccggaagtcgttgctggagcttccc
ggcgtcggcgcgtggactgccgaactcatcgccatgcgcggcctgggcgaccccgatgcg
ttcccggcgaccgatctgggggtgcgggtggccgtgcgccggctgggtttacccgagcag
ccgcgggccctgaccgaacgcagtcttcgctggcgcccgtggcggtcgtatgccacccag
catctgtggaccgcactcgatcacgccgtgaacgactggccccggacctccaaggagatc
gcatga

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