Mycobacterium sp. JLS: Mjls_3556
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Entry
Mjls_3556 CDS
T00482
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mjl
Mycobacterium sp. JLS
Pathway
mjl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mjls_3556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjl03019
]
Mjls_3556
03009 Ribosome biogenesis [BR:
mjl03009
]
Mjls_3556
Enzymes [BR:
mjl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mjls_3556
Messenger RNA biogenesis [BR:
mjl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mjls_3556
Ribosome biogenesis [BR:
mjl03009
]
Prokaryotic type
rRNA processing factors
Mjls_3556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
BUD22
Motif
Other DBs
NCBI-ProteinID:
ABN99333
UniProt:
A0A5Q5CJ96
LinkDB
All DBs
Position
complement(3745280..3748243)
Genome browser
AA seq
987 aa
AA seq
DB search
MADSENTQAQDSPDSSEEASPRERLPERLRVHSLARVLGTTSRRVLDALAELDGRARSAH
STVDKTEAERVREVLAGSDGDAPVEAPAPAEIAESVADAPEVVIETVESVEVTIDVAPVD
DTPDVPEPEDEPESRTILETAPVERADYLPLFVAPQPVRFEPADEDDDEDEDDDVAASAD
SEDDDEDDQSERPAARRRRRGRRGRGRGRGEQSDDNGEPDAAEGTETKTDGQADSDQDTG
DDSDEDGDEDTSGGDGSSRRRRRRRRRKSGASDDSDNGSPDDPPNTVVHERPPRERGGKS
GDSDDNEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKV
RTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGR
GRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR
YLVYVPGASSTGISRKLPDTERQRLKEILREVVPADAGVIIRTASEGVKEDDIRSDVNRL
QERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWNTINS
YVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRT
EAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN
RDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIVLH
GDPIDNASGNGRKSEPGTGRRSKRGKKGGKPEEAPAAVPVIKVPPHPAGEHPMFKAMAAA
NGRDDESEDESDESADEQSGAREDDTAEKVHEAVGEELDDEDFEDAEDAEDSDDSDEDED
EDSDDSDEDEIDLDNDDDEEDDDIEVLDDEDSDEDEDSDEDEDSDEDSDEDSDEDSDDED
EPEVIAVPVRRPRRRAAARPAGPPSSE
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacagtgaaaatactcaagcccaagactcgccggactcttcagaagaggcttcg
cctcgcgaaagacttcccgaacgcctgagggtgcactcactggcccgggtgctgggcacc
accagccggcgggtcctcgacgcactggccgaactcgacggccgcgctcgcagcgcgcac
tcgaccgtcgacaagaccgaggccgagcgggtccgcgaagtgctcgccggcagcgacggg
gacgcccccgtcgaagccccggcgcccgcggagatcgccgagtcggtcgccgatgccccc
gaggtggtcatcgagacggtcgagtcggtcgaggtcacgatcgacgtggctcccgtcgat
gacacgccggacgtgccggaacccgaggacgagccggaatcgcggacgatcctcgagacg
gcccccgtcgagcgggcggactacctgccgctgtttgtcgcaccccagccggtgcggttc
gagcccgccgacgaggacgacgacgaagacgaggacgacgacgtcgccgcgtcggccgac
agcgaggacgacgacgaggacgaccagtcggagcggcccgccgcgcggcgccgccggcgg
ggacgccgcggccggggccgggggcgcggcgaacagagcgacgacaacggggagcccgac
gccgccgagggcaccgagacgaagaccgacgggcaggccgactccgatcaggacaccggc
gacgactccgacgaggacggcgacgaggacacctcgggtggcgacggcagttcgcggagg
cgtcgccgccggcgtcggcgcaagtccggcgcgtcggacgactccgacaacggttcaccc
gacgacccgccgaacaccgtcgtgcacgaacgcccgccgcgtgagcggggtggcaagtcc
ggcgacagcgacgacaacgagatccagggcatcagcggctcgacccggctggaagccaag
cggcagcgccgtcgcgacggtcgggacgccggacgccgccgcccgccgatcctgtccgag
gccgagttcctcgcccgccgcgaggccgtcgaacgcgtcatggtggtgcgcgacaaggtc
cgcaccgaaccgccccacgagggtgcgcgctacacccagatcgcggtgctcgaggacggg
gtcgtcgtcgaacacttcgtgacgtcgccggcctcggcgtccctggtcggcaacatctac
ctgggcatcgtgcagaacgtgctcccgtcgatggaggccgcgttcgtcgacatcggtcgc
ggtcgcaacggcgtgctctacgccggtgaggtgaactgggaggccgcgggtctcggcggg
cagaaccgcaagatcgagcaggcgctcaaacccggcgactacgtcgtcgtgcaggtcagc
aaggatccggtcgggcacaagggtgcccgcctgaccacgcaggtgtcgctggccggccgt
tacctggtgtacgtgccgggtgcgtcgtcgaccgggatcagccgcaagctgcccgacacc
gagcggcaacggctcaaggagatcctgcgcgaagtggtgcccgccgacgccggggtgatc
atccgcaccgcgtcggagggcgtgaaggaagacgacatccgctccgacgtgaaccggttg
caggagcgctggacacagatcgaggccaaggccgccgagatcaccgcgaagaaggccggc
gccgccgtcgcgctctacgaagagcccgacgtgctggtgaaggtgatccgcgacctgttc
aacgaggatttctccgggctgatcgtctcgggtgacgaggcgtggaacaccatcaactcc
tacgtcgagtccgtggcgcccgacctgatgccgcggctgaccaagtacgaaccggcaggc
aaccccaacggcgagggtccggatgtgttcgccgtgcaccgcatcgacgaacaactcgcc
aaggccatggaccgcaaggtgtggctgccgtcgggcgggacgctggtcatcgaccgcacc
gaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccgggtcgggcggcaacctc
gagcagacggtcacccgcaacaatctcgaggcggccgaggagatcgtgcgccaactgcgg
ttgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctcgagtcgaac
cgcgatctggtgttgcggcggctgaccgaggcgctggcccgtgaccgcacccgccaccag
gtgtccgaggtgacctcgctgggtctggtgcagctgacgcgtaagcggctgggcaccggg
ctgatcgaggccttctccaccccgtgtccgcactgtgcggggcgcggcatcgtgctgcac
ggcgatccgatcgacaacgcctcgggtaacgggcgcaagtccgagccggggacgggcagg
cgcagcaagcgcggcaagaagggcggtaagcccgaggaggcgcccgcggccgtgccggtg
atcaaggtgccgccgcaccccgccggtgagcacccgatgttcaaggcgatggccgccgcg
aacggccgcgacgacgagtccgaggacgagtccgacgagtcggccgatgagcagtccggt
gcgcgcgaggacgacaccgccgagaaggtgcacgaggccgtcggtgaagaactcgacgac
gaggacttcgaggacgcggaggacgcggaggactccgacgattccgatgaggacgaggac
gaggattccgacgactccgatgaggacgagatcgacctcgacaacgacgacgacgaagag
gacgacgacatcgaggtcctcgacgacgaggattccgacgaggacgaggattccgacgag
gacgaggattccgacgaggattccgatgaagactccgatgaggactccgatgacgaggac
gaacccgaggtgatcgcggtcccggtgcggcgtccgcgccgacgcgctgccgcacgtccg
gcgggtccgcccagcagcgagtag
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