KEGG   Mycobacterium sp. JLS: Mjls_4732Help
Entry
Mjls_4732         CDS       T00482                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD ligase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mjl  Mycobacterium sp. JLS
Pathway
mjl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mjl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Mjls_4732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mjl03400]
    Mjls_4732
Enzymes [BR:mjl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mjls_4732
DNA repair and recombination proteins [BR:mjl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Mjls_4732
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABO00498
LinkDB All DBs
Position
complement(4978971..4981247)
Genome map
AA seq 758 aa AA seqDB search
MVDHFGRVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGEL
EFFEKQLASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGSG
GDLTPGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITGIGLTAYPLTSGSKGLHLYVPL
QEPISSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSL
RGREHPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSM
RDPSRTPEPVPPRPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSE
NHLAVHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVII
TLHGNRIDGRYALIQTDGKNWLAHRMKDQGTPTFEDFAPMLATHGSVEKLTAKQWAFEGK
WDGYRLLVDADHGKLCLKSRSGRDVTSEYPQLRALAADLADHHVVLDGEVVALDDKGVPS
FGHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGL
EALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIG
ALVLGIPGPDGLQFVGRVGTGFTEKQLGSLKKTLAPLHTDESPFATRLPTQDATGVTFVR
PELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE
NT seq 2277 nt NT seq  +upstreamnt  +downstreamnt
gtggtggatcacttcggtcgggtgcgcctgaccaacccggacaaggtgctgtacccagcg
acgggcaccaccaaggccgaggtgttcgagtactacgtcgacgtggccgaggcgatggtg
ccgcacatcgccggccgggccgtcacccgtaagcgctggcccaacggcgtcggcgagctg
gagttcttcgagaagcagctggccagctccgcacccgactggctcgcgcgcggcacgatc
gtgcacaaatccggcaccaccacctacccgatcatcgacacccgcgaaggtctggcgtgg
atcgcgcagcaggccgcgctggaggtgcacgtgccgcagtggcggttcgtcggatcgggt
ggcgacttgactcccggcccggccacccgcatcgtgttcgacctcgaccccggcgagggc
gtcacgttccgtcagctgtgcgaggtcgcgcacgaggtccgcgacctgatcaccggcatc
gggctgacggcctatccgctgaccagcggcagcaagggtctgcacctctacgtcccgctc
caggagccgatcagctcccagggcgcgtcggtgctcgccaaacgcgtcgcccaacagctc
gagaaggccatgcccaaacaggtcaccgccacgatgaccaagagcctgcgcgagggcaag
gtgttcctcgactggagccagaacaacggcaacaagaccacgatcgcgccgtactccctg
cgcggccgcgagcatccaacggttgcggcgccgcgcacctgggaggagatcgaggacccc
gacctgagacatctgcgattcgacgaagtgctcgagcggatcgaggagttcggggacctg
ctggccgatctcgacgagtacgtgcctgtcgaggaccggctcaccaagtaccgcagcatg
cgcgacccgtcgaggacgccggagcccgtgccgccgcgaccgccgaaggccggcaacaac
gaccgcttcgtgatccaggaacaccatgcccggcggctgcactacgacctgcgtctggaa
cgcgacggtgtgctggtcagctgggcggtgccgaagaacctgcccgaccggccctcggaa
aaccacctcgccgtgcacaccgaggaccatccgatggagtacctcaccttccacggcacc
atcccgaagggtgagtacggcggcggcgacatgatcgtctgggacaccggcacgtatgag
accgagaagttcaacgaccacgccccggacggacccgccaagggcggggaggtcatcatc
accctgcacggcaacaggatcgacggccgttacgcactgatccagaccgacggcaagaac
tggctcgcccaccggatgaaggatcagggcaccccgacgttcgaggacttcgcgccgatg
ctggccacccacggctcggtcgagaagctcacggcgaaacagtgggcgttcgaaggcaag
tgggacggctaccggctgctggtcgacgccgaccatggcaagctgtgcctgaagtcccgt
agcggccgcgacgtcacctcagaatatccccaattacgcgcgctggcagcagatctcgcc
gaccaccatgtcgtgctcgacggggaggtcgtcgccctcgatgacaagggcgtgccgagc
ttcggccatatgcagaaccgggcccggtccacccgtgtcgagttctgggcgttcgacatc
ctgcgcctcgacggccgttggctgctgaaggcgaagtaccgagaccgccgaaagctgttg
gagacgttggccagtgggggcggactgatcgtgcaacccctgctcgacggcgacggcctc
gaggcgctcgaggacgcccgcaaacgcaggtgggagggtgttgtcgccaagaaatgggat
tccacctatcagccggggcggcgctcgtcggcgtggatcaaggacaaactgtggaacacc
caggaggtcgtgatcggcggctggcgcgaaggcaatggcggccgcagcagcggcatcggc
gcgctggtgctcggcatccccggacccgacggcctgcagttcgtcggccgggtcggcacc
gggttcaccgagaagcaactcggcagtctcaagaagacgttggcgccgctgcacaccgac
gaatcccccttcgcgacaaggcttcccacccaggacgccacgggcgtgacgttcgtgcgg
cccgaactcgtcggcgaggtgcgctacagcgagcgcaccggcgacggccggttgcgccaa
ccgtcctggcgggggctgcgaccggacaagacgccggacgacgtcgtgtgggagtag

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