KEGG   Mesorhizobium jarvisii: EB229_21455
Entry
EB229_21455       CDS       T06715                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mjr  Mesorhizobium jarvisii
Pathway
mjr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mjr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EB229_21455 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mjr03400]
    EB229_21455 (mfd)
Enzymes [BR:mjr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EB229_21455 (mfd)
DNA repair and recombination proteins [BR:mjr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      EB229_21455 (mfd)
SSDB
Motif
Pfam: TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID ResIII MFD_D3 RecG_dom3_C AAA_22 UB2H SecA_DEAD
Other DBs
NCBI-ProteinID: QKC64564
UniProt: A0A6M7THZ5
LinkDB
Position
4339082..4342579
AA seq 1165 aa
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAAFEIAPDKPVLFVARDGQRLPVIIEA
LAFAAPGLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGIVDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYTAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARKKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNINVFDVVVRHIADERAARRRIVIAGWTEGSLDRLGQ
ILTEHHLGNLKQVETLAQAEQLEPGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSAGDIVVHTDHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPVRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
SEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVKFIGEQGSLAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAV
NT seq 3498 nt   +upstreamnt  +downstreamnt
atgagcctcattcccaccattggtctgccgaaaggccgtgccggccagttcatcgtcgat
ggtgtcgccgatggatacgaggcgtttgcactggtgcaggccgcattcgagatcgcgccc
gacaagccggtgctgttcgtggcgcgcgacggccagcgcctgcctgttatcatcgaggca
ctggcctttgccgcgcccggactgccggtgctggaactgccggcctgggactgtctgccc
tacgatcgcgtctcgcccggctcggatgccgccgccaagcgcctcgacgcgctgacggcc
atgatcgcgctggcgaagaagccgcatcgcgccgtcatcctcaccaccgccaatgcgctg
ctgcagcgcattccgccggctgatctggtcgaggcacagacctttcatgccaggcctggc
aaccagatcgacatgaacgcgctgattgcgcggctggaaacgtccggcttcgagcgggtg
ccgacagttcgcggcatcggcgagttcgcggtgcgcggcggcattgtcgaccttttcgcg
cccggctggaccgaggcgctcaggctcgatttcttcggcgacacgctggaatcgatccgc
gtcttcgatgccgccacccagcgcaccaccggccagcgcaagtcgatggcgctgcaggcg
atgagcgaagtggcgctgacgcctgaaaccatcagccgcttccgccgctcctatatcgaa
gcctttggcgcgccgcagcgcgacgacgggctctacacggcagtcagtgagggcaggcgg
ttcgccggcatggagcattggctgccgttcttctatgagcggctggagacggtgttcgac
tatctgccggatacgcctgtggttttcgaccatctggcgcatgaggcgctggccgagcgc
cacacactgatcctcgatcactatgaagcgcgcaaaaagcaggccgatgctgcgctgaag
gatgccgtgccctacaagccggtggcgccggatctgctctacctctcgccggagaacctg
atcgcctcgctcggtccacgcgaagcgatcgacttcacgcccttcgacgcgcccgatgcc
ggcgcgaaaaaggtctatcacgccggctcgcgccatggccgcagcttcgtcgaggagcgc
gccgatccaaatatcaacgtcttcgatgtcgtcgtcaggcatatcgccgacgagcgcgcg
gcacgtcggcgtattgtcatcgccggctggacagagggttcgctcgaccggcttggccag
atcctcaccgagcatcatctgggcaatctcaagcaggtcgagacgctggcgcaagccgaa
cagctcgagccggggcaggcggcattggccgtgctgccgcttgaatccggcttcgagacc
gaaaaactggtcgtcgtcgccgaacaggatattttgggcgaccggctgatccggcgttcc
aagcgcaagaagcgcgcctccgacttcatcgcggaggcctctgcgctgtcggccggcgat
atcgtcgtccacactgaccatggcattggccgcttcatcggcctgcgcaccatcgaggcg
gtcggcgcgccgcatgactgcctggaaatccactatgccggcgatgaccggctgttcctg
ccggtcgaaaacatcgagcttctgtcgcgttatggctccgactccgccgaggcgacgctg
gacaagctgggtggcggcgcttggcagtcgcgcaaggccaagctgaagcggcgcctgctc
gacatggccgggcagctgatccgtatcgccgccgagcggcagatgcgcgccgcgccggcg
ctggtgccggccgaaggtctctatgacgaattcgccgcgcgtttcccctatgaggaaacc
gacgaccagcagacggccatcgactcggtcagggatgacctcggcgccggcaagccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaagtggcactgcgcgccgcc
ttcatcgcggcgatggaagggttccaggtcgcggtcgtggtgccgacgacgctgttgtca
cgccagcatttcaagaccttttcccagcgcttctcgggccttcccgtccgcgtcgcgcag
gcctcgcggctggtcggtgccaaggaactggcggagacgaagaaggctctggccgagggc
caggtcgacatcgttgtcggcacccatgcgctgctcggctcctcgatctcgttcaagaat
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggaacggctg
aaggatctgaagaccgatgtccatgtgctgacgctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgacgggcgtgcgcgaactgtcgctgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgcccttcgatccgttggtcattcgcgagacgctg
cttcgcgagcgttatcgtggcggacactccttctatgtcgtcccgcgcatcagcgatctc
tcggaaatccatgatttcctgaaagaatcggtgccagaactgaaagtggctgtggcccac
ggccagatgccgccaggcgaactcgacgacatcatgaacgccttctatgatgggcaatac
gatgtgcttctgtcgaccaccatcgtcgaatccggcctcgacatcccgaccgccaacacg
ctgatcatccatcgcgccgacatgttcggcctctcgcagctctatcagttgcgcggccgc
gtcggccgctccaaggtgcgcgcctacgcgctgttcacgctgccggccaaccgcaaactg
actgacacggccgagcgccggctgaaagtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccacgatctcgatataaggggcgccggtaatctcttgggcgaagag
cagtccggccatatcaaggaggtcggcttcgagctctaccagcagatgctggaagaggcc
gtagccgaggtgaaggattccggcgaggtccaggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgccggacctgcagctcaggctggcg
ctttaccgccgcctcggcgacctcgaaaacaccgaggagatcgacgctttcggcgccgaa
ctgatcgaccgtttcggcccgctgccggacgaggtgaagcatctcttgaagatcgtcttc
atcaaggcgctctgccgcaaagccaatgtcgagaagctcgatgcgggcccgaagggcgtt
gtcattcatttccgcaagcgcgagttctccaacccggtcggcctggtcaagttcatcggc
gagcagggttcgctggccaagatccgccccgaccacagcgtcgtcttcacccgcgattgg
ccgaccgccgagaagcggctggcgggctcggcggtggtcatgacgcaactggcgcgccta
gttgagaaggctgtgtag

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