Mesorhizobium jarvisii: EB229_21455
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Entry
EB229_21455 CDS
T06715
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mjr
Mesorhizobium jarvisii
Pathway
mjr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EB229_21455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjr03400
]
EB229_21455 (mfd)
Enzymes [BR:
mjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EB229_21455 (mfd)
DNA repair and recombination proteins [BR:
mjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EB229_21455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKC64564
UniProt:
A0A6M7THZ5
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All DBs
Position
4339082..4342579
Genome browser
AA seq
1165 aa
AA seq
DB search
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAAFEIAPDKPVLFVARDGQRLPVIIEA
LAFAAPGLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGIVDLFA
PGWTEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYTAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARKKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNINVFDVVVRHIADERAARRRIVIAGWTEGSLDRLGQ
ILTEHHLGNLKQVETLAQAEQLEPGQAALAVLPLESGFETEKLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSAGDIVVHTDHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPVRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
SEIHDFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVKFIGEQGSLAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcattcccaccattggtctgccgaaaggccgtgccggccagttcatcgtcgat
ggtgtcgccgatggatacgaggcgtttgcactggtgcaggccgcattcgagatcgcgccc
gacaagccggtgctgttcgtggcgcgcgacggccagcgcctgcctgttatcatcgaggca
ctggcctttgccgcgcccggactgccggtgctggaactgccggcctgggactgtctgccc
tacgatcgcgtctcgcccggctcggatgccgccgccaagcgcctcgacgcgctgacggcc
atgatcgcgctggcgaagaagccgcatcgcgccgtcatcctcaccaccgccaatgcgctg
ctgcagcgcattccgccggctgatctggtcgaggcacagacctttcatgccaggcctggc
aaccagatcgacatgaacgcgctgattgcgcggctggaaacgtccggcttcgagcgggtg
ccgacagttcgcggcatcggcgagttcgcggtgcgcggcggcattgtcgaccttttcgcg
cccggctggaccgaggcgctcaggctcgatttcttcggcgacacgctggaatcgatccgc
gtcttcgatgccgccacccagcgcaccaccggccagcgcaagtcgatggcgctgcaggcg
atgagcgaagtggcgctgacgcctgaaaccatcagccgcttccgccgctcctatatcgaa
gcctttggcgcgccgcagcgcgacgacgggctctacacggcagtcagtgagggcaggcgg
ttcgccggcatggagcattggctgccgttcttctatgagcggctggagacggtgttcgac
tatctgccggatacgcctgtggttttcgaccatctggcgcatgaggcgctggccgagcgc
cacacactgatcctcgatcactatgaagcgcgcaaaaagcaggccgatgctgcgctgaag
gatgccgtgccctacaagccggtggcgccggatctgctctacctctcgccggagaacctg
atcgcctcgctcggtccacgcgaagcgatcgacttcacgcccttcgacgcgcccgatgcc
ggcgcgaaaaaggtctatcacgccggctcgcgccatggccgcagcttcgtcgaggagcgc
gccgatccaaatatcaacgtcttcgatgtcgtcgtcaggcatatcgccgacgagcgcgcg
gcacgtcggcgtattgtcatcgccggctggacagagggttcgctcgaccggcttggccag
atcctcaccgagcatcatctgggcaatctcaagcaggtcgagacgctggcgcaagccgaa
cagctcgagccggggcaggcggcattggccgtgctgccgcttgaatccggcttcgagacc
gaaaaactggtcgtcgtcgccgaacaggatattttgggcgaccggctgatccggcgttcc
aagcgcaagaagcgcgcctccgacttcatcgcggaggcctctgcgctgtcggccggcgat
atcgtcgtccacactgaccatggcattggccgcttcatcggcctgcgcaccatcgaggcg
gtcggcgcgccgcatgactgcctggaaatccactatgccggcgatgaccggctgttcctg
ccggtcgaaaacatcgagcttctgtcgcgttatggctccgactccgccgaggcgacgctg
gacaagctgggtggcggcgcttggcagtcgcgcaaggccaagctgaagcggcgcctgctc
gacatggccgggcagctgatccgtatcgccgccgagcggcagatgcgcgccgcgccggcg
ctggtgccggccgaaggtctctatgacgaattcgccgcgcgtttcccctatgaggaaacc
gacgaccagcagacggccatcgactcggtcagggatgacctcggcgccggcaagccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaagtggcactgcgcgccgcc
ttcatcgcggcgatggaagggttccaggtcgcggtcgtggtgccgacgacgctgttgtca
cgccagcatttcaagaccttttcccagcgcttctcgggccttcccgtccgcgtcgcgcag
gcctcgcggctggtcggtgccaaggaactggcggagacgaagaaggctctggccgagggc
caggtcgacatcgttgtcggcacccatgcgctgctcggctcctcgatctcgttcaagaat
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggaacggctg
aaggatctgaagaccgatgtccatgtgctgacgctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgacgggcgtgcgcgaactgtcgctgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgcccttcgatccgttggtcattcgcgagacgctg
cttcgcgagcgttatcgtggcggacactccttctatgtcgtcccgcgcatcagcgatctc
tcggaaatccatgatttcctgaaagaatcggtgccagaactgaaagtggctgtggcccac
ggccagatgccgccaggcgaactcgacgacatcatgaacgccttctatgatgggcaatac
gatgtgcttctgtcgaccaccatcgtcgaatccggcctcgacatcccgaccgccaacacg
ctgatcatccatcgcgccgacatgttcggcctctcgcagctctatcagttgcgcggccgc
gtcggccgctccaaggtgcgcgcctacgcgctgttcacgctgccggccaaccgcaaactg
actgacacggccgagcgccggctgaaagtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccacgatctcgatataaggggcgccggtaatctcttgggcgaagag
cagtccggccatatcaaggaggtcggcttcgagctctaccagcagatgctggaagaggcc
gtagccgaggtgaaggattccggcgaggtccaggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgccggacctgcagctcaggctggcg
ctttaccgccgcctcggcgacctcgaaaacaccgaggagatcgacgctttcggcgccgaa
ctgatcgaccgtttcggcccgctgccggacgaggtgaagcatctcttgaagatcgtcttc
atcaaggcgctctgccgcaaagccaatgtcgagaagctcgatgcgggcccgaagggcgtt
gtcattcatttccgcaagcgcgagttctccaacccggtcggcctggtcaagttcatcggc
gagcagggttcgctggccaagatccgccccgaccacagcgtcgtcttcacccgcgattgg
ccgaccgccgagaagcggctggcgggctcggcggtggtcatgacgcaactggcgcgccta
gttgagaaggctgtgtag
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