KEGG   Mycobacterium kansasii 824: LH54_22970Help
Entry
LH54_22970        CDS       T03653                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mki  Mycobacterium kansasii 824
Pathway
mki03030  DNA replication
mki03410  Base excision repair
mki03420  Nucleotide excision repair
mki03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mki00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LH54_22970 (ligB)
   03410 Base excision repair
    LH54_22970 (ligB)
   03420 Nucleotide excision repair
    LH54_22970 (ligB)
   03430 Mismatch repair
    LH54_22970 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mki03032]
    LH54_22970 (ligB)
   03400 DNA repair and recombination proteins [BR:mki03400]
    LH54_22970 (ligB)
Enzymes [BR:mki01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LH54_22970 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     LH54_22970 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LH54_22970 (ligB)
DNA replication proteins [BR:mki03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    LH54_22970 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     LH54_22970 (ligB)
DNA repair and recombination proteins [BR:mki03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LH54_22970 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     LH54_22970 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     LH54_22970 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AIR30195
UniProt: X7Y6W4
LinkDB All DBs
Position
complement(5030271..5031800)
Genome map
AA seq 509 aa AA seqDB search
MLLLDVATTSLDVGATSSRLSKVERIADLLRRAAPDPELVAILVAWLSGELPQRHIGVGW
ASLRSLPPPAGHATLTVTGVDAAFSEIGATSGSGSQARRAQLVSELFSAATESEQTFLFR
LLSGELRQGALTGIMTDAVAKAAAIRASAVQRAAMLGGDLPAVAAAGLTGGAAALDAFTL
RVGRPVGPMLAQTATGVTDALERHYGTTIFEAKLDGARVQIHRAGDHVTVYTRSLDDVTA
RLPEVVEATLALPVHELIADGEAIAWRPDHRPHRFQVTASRFGRSVDVAAARATQPLSVF
FFDILHRDGDDLLDAPTTERLAVLDAVVPVRHRVDRLITSDAAAAAAFLDATLAAGHEGV
MAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLGVEWGSGRRRGKLSNIHLGARDPASGKY
VMVGKTFKGMTDAMLDWQTARFTGLAIGGTDGYVVQLRPEQVVEVAVDGVQGSSRYPGGV
ALRFARVLRYRDDKSPDEADTIDTVRALY
NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt
gtgctccttctcgacgtggccactacctcacttgacgtgggcgccacctcgtcgcggctg
agcaaggtcgaacgcatcgccgacctgcttcgccgcgccgcacccgaccccgagctggtg
gcgatcctcgtggcgtggctttccggggaactgccacagcgacacatcggcgtcggctgg
gcgtcgttgcggtcgctaccgccgccagcggggcatgcgacgctgaccgtcacgggtgtc
gacgccgctttctccgagatcggcgccacctcgggcagcggctcgcaggcacgccgcgca
cagctggtctccgagttgttctcggcggcaaccgaatccgagcagaccttccttttcagg
ctgctcagcggtgagctgcgccagggtgcgctgaccgggatcatgaccgacgccgtcgcc
aaagcggccgcaatccgcgccagcgcagtgcagcgcgccgccatgctgggcggtgatctg
ccggcggtcgccgcagcgggcctgaccggcggggcggcggcgctggacgccttcacgcta
cgggtgggccggccggtgggcccgatgctggcgcagaccgcgaccggtgtgaccgacgca
ctcgaacgtcactacggcacaacgatattcgaggcaaagctggacggcgcccgagtacag
attcaccgtgccggcgaccacgtcaccgtctacacccgaagcctcgacgacgtcaccgcc
cggctgccggaggtcgtggaggcaaccctcgcgctgccggtgcacgagctgatcgccgac
ggtgaggcgatcgcgtggcgacccgaccaccgtccgcatcgcttccaggtcaccgcgtcc
cggttcggccggtcggtcgatgtagcggccgcccgtgcaacgcagccgctttcggtattt
ttcttcgacatcttgcatcgtgacggcgacgacctgctcgacgcgccgaccaccgagcgg
ctggccgtcctggacgccgtcgtacccgtcagacaccgggtggaccggctgatcacgtcc
gacgcggcggccgcggctgcctttctggacgcgacattggcagccggtcatgaaggcgtg
atggccaaggcgccaggagcgccgtaccaggccgggcgtcgcggcgcgggatggctcaag
gtcaagccggtgcacacgctggatctggtggtgctcggcgtggagtggggttcgggccgc
cgtcgcgggaagctgtccaacattcacctgggcgctcgggacccggccagcggtaagtac
gtcatggtgggcaagaccttcaaggggatgaccgacgccatgctggactggcagaccgcc
cggttcaccgggctagccatcggaggcacggacggatatgtcgtccagctgcgccccgag
caagtggtcgaggtggcggtggacggggtgcaggggtcgtcgcgttatccaggcggagtc
gcgttgcggtttgcccgcgtgctgcgttatcgagacgacaagagcccggacgaagccgac
accatcgacaccgtgcgcgcactgtattga

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