KEGG   Methanocorpusculum labreanum: Mlab_0620Help
Entry
Mlab_0620         CDS       T00472                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mla  Methanocorpusculum labreanum
Pathway
mla03030  DNA replication
mla03410  Base excision repair
mla03420  Nucleotide excision repair
mla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mlab_0620
   03410 Base excision repair
    Mlab_0620
   03420 Nucleotide excision repair
    Mlab_0620
   03430 Mismatch repair
    Mlab_0620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mla03032]
    Mlab_0620
   03400 DNA repair and recombination proteins [BR:mla03400]
    Mlab_0620
Enzymes [BR:mla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mlab_0620
    6.5.1.6  DNA ligase (ATP or NAD+)
     Mlab_0620
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Mlab_0620
DNA replication proteins [BR:mla03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Mlab_0620
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Mlab_0620
DNA repair and recombination proteins [BR:mla03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Mlab_0620
   NER (nucleotide excision repair)
    Other NER factors
     Mlab_0620
   MMR (mismatch exicision repair)
    Other MMR factors
     Mlab_0620
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABN06794
UniProt: A2SR38
LinkDB All DBs
Position
complement(595504..597144)
Genome map
AA seq 546 aa AA seqDB search
MQFVEFAEICNTIEGTSSRLATADILAEKFPLLTEEELPVFVRFMRGRLFPDWSSEKLGF
GPNLLYDALAYVIGKKRSYVVSAINNAGDIGKVVESLIEKREQTMFFSEELDLLDVNARF
LQMAKSSGRRSQQERLRSAQYLLSNATPLEGRYLARLMLEEMRIGVGEGVVKDAVSKAFG
VPSDIVEHAHQALNDLGEVAFLAKTDPSRLSNVHITAFRPVKMMLAQQGSITSMVETHGT
LAAENKYDGSRFQFHKSGGKCAIYSRRLEEMTASLPDVVKMLDKATDHDVIIDGEVIAIM
NGKPMPFQTILRRIRRKHDVGDAQEAITLLPWVFDILAADGETLIDLPFRERRKILESVM
NAYVAPQLVSDSAEEIEAYYHSSLDNGNEGIMLKVLDSPYLPGNRGKLWIKIKPEVDTID
LVVTAAEWGEGKRAKMFGSFLLACQDENGDLLEISRVATGIDDSMLSTLYDLFKDKIIAE
KGKTVTFEPDVVFEVGYAELQKSTNYEAGYALRFPRFVRLRDDKDVSEIETLESLTRRYS
LQNKEE
NT seq 1641 nt NT seq  +upstreamnt  +downstreamnt
atgcagtttgtcgagtttgcagagatatgtaatacgatcgagggaacatcctcgcgtctt
gcgacggccgatattctggccgaaaaatttcctctactcaccgaagaggaactgcccgtc
ttcgtcagattcatgcggggaagactctttcccgactggtcgtccgagaagctcgggttc
ggcccgaatcttttgtatgatgcccttgcctacgtcatcggtaaaaagcggagttatgtg
gtctcggcgatcaacaacgcaggtgatatcggtaaagtcgtcgagagtcttatcgaaaaa
cgggagcagacgatgtttttctcggaagaactggatcttctggatgtgaacgcccggttt
ctgcagatggcaaaatcctcgggaagacgatctcagcaggagcggctgagatccgcccag
tatcttctttcgaacgcaacgccgcttgaggggagataccttgcccgtctcatgctcgaa
gagatgcggatcggtgttggagaaggcgtcgtaaaagacgcggtctcaaaagcgttcggc
gttccgtcagacattgtcgaacacgctcatcaggctctcaacgacctcggagaggtggcg
ttcctcgcaaaaaccgacccctcccggctttccaatgttcatatcaccgcgtttcgcccg
gtaaaaatgatgcttgcccagcagggctccatcacctcgatggtcgaaacgcatggaaca
ctcgctgcggaaaacaaatacgacggcagcagattccagttccataaatccggcgggaag
tgtgcgatctactccaggcgtcttgaagagatgacggcgtcacttcccgatgttgttaag
atgctggataaggcgaccgatcatgacgtcatcatcgacggcgaggtgatcgcgatcatg
aatggaaaacccatgcctttccagacaatccttcggcggatccgcaggaagcatgatgtc
ggggatgcgcaggaggcaatcacccttcttccctgggtgttcgatatccttgctgccgac
ggagagaccctgatcgatctgccctttagggagcggcgcaagatccttgaatccgtcatg
aatgcgtatgtcgcaccgcagctcgtcagcgactccgcagaagagatcgaagcgtattac
cactcctcgctcgacaatgggaatgaagggatcatgctcaaagtgctcgactcgccgtat
cttccgggaaatcgtggcaagctctggatcaagatcaagcccgaggtcgatacgatcgac
ctggtggtgacggcggccgagtggggcgaaggaaaacgtgcgaagatgttcggctcgttc
cttcttgcctgtcaggatgagaacggcgaccttctggagatctcgcgggtggcgaccggt
atcgacgactctatgctttcgaccctgtatgatcttttcaaagacaagatcattgccgaa
aagggaaagaccgtgaccttcgaaccggatgtggtctttgaggtggggtatgcggaactg
cagaaaagtacgaattacgaggccgggtatgctctccggttcccgcgttttgtcaggctt
agggacgacaaggatgtctcggagatcgagacgctggaaagcctgacccgccggtattct
ctgcagaataaggaagagtaa

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