Methylovirgula ligni: CWB41_03470
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Entry
CWB41_03470 CDS
T05824
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWB41_03470 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlg03019
]
CWB41_03470 (pnp)
03016 Transfer RNA biogenesis [BR:
mlg03016
]
CWB41_03470 (pnp)
Enzymes [BR:
mlg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CWB41_03470 (pnp)
Messenger RNA biogenesis [BR:
mlg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWB41_03470 (pnp)
Transfer RNA biogenesis [BR:
mlg03016
]
Prokaryotic type
tRNA degradation factors
CWB41_03470 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
QAY94911
LinkDB
All DBs
Position
731118..733262
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AA seq
714 aa
AA seq
DB search
MFDIHREELDWAGRKLVLETGRIARQADGAVLATYGETTVLATVVSAKSPKPGIDFFPLT
VNYQEKAFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPDGYRNDTQVVVTVLSH
DLENDPDILSLVAASAALTLSGIPFTGPVGGARVGYINGQLKVNPTIEELKDSALDLVVA
GTGEAVLMVESEAKELSEETMLAAVMAGHKGFQPVIDAIIRLAEKAAKEPRELVVADKSG
VEAAVAGIAEAELREAYKITAKAERYKAVDAVKAKVTAALLPADGEAKFTKEQVGEAFHD
LQAKVVRWNILDDGIRIDGRDVKTVRPILAQVGILPRTHGSALFTRGETQALVVATLGTG
EDEQYIDSLEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPTAA
EFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKAPTAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTATGITSLQMDIKITGINEEIMRVALGQAKDGRLHILGEMAK
ALTGARAELGEFAPRIESFKIATDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS
SDANSIKAAVAWIKSIAMDPEIGHIYEGTVVKVVEFGAFVNFFGSKDGLVHISQLAKGRV
AKTSDVVKEGDKVKVKLLGFDDRGKVRLSMRVVDQVTGEDLEAKEKAADADVAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatatccatcgtgaagaacttgattgggccgggcgcaagctcgtgctcgaaacc
gggcgcatcgcccgccaggcggacggcgccgtgctcgctacctatggcgagaccactgtc
ctcgccaccgtcgtatctgccaaatcgccgaagcccggcatcgattttttccccctcacc
gtcaattaccaggagaaggcgttcgccgccggccgcattcccggcggctatttcaagcgc
gaaggccgtccctccgagaaggagacgctggtctcccgcctgatcgaccggccgatccgc
ccgcttttcccggacggctatcgcaacgacacgcaggtggtcgtcaccgtgctttcgcac
gatcttgaaaacgatcccgacattctgtcgctggtggcggcctccgccgccctcacgctc
tccggcatcccgttcacggggccggttggcggcgcgcgcgtcggctacatcaacggccag
ttgaaggttaacccgacgatcgaggagctgaaggattcggcgctcgatctcgtcgtcgcc
ggcaccggcgaagccgtgctgatggtcgagtccgaggccaaggaactctccgaagagacc
atgctcgcggcggtcatggccggccacaagggcttccagcccgtcatcgacgcgatcatc
cgtctcgccgaaaaggcggcgaaggagccgcgcgaactcgtcgttgccgacaagtccggc
gtcgaggcggcggtcgccggcatcgccgaagcggagctgcgcgaggcctataagatcacc
gccaaggcggaacgctacaaggccgtggacgccgtgaaggccaaggtaacggcagcgctc
ctgccggccgatggcgaagccaagttcaccaaggagcaggtcggcgaagccttccacgat
ctccaggccaaggtcgtgcgctggaacattctcgacgacggcatccgcattgacgggcgc
gacgtgaagacggtccgacccatcctggcgcaggtcggcatcctgccgcgcacgcacggc
tcggcgctgttcacccgcggcgagacgcaagctttggtcgtcgccacgctcggcaccggc
gaggacgagcagtacatcgattcgctcgaaggaacctacaaggagcgcttcctgctccac
tataacttcccgccctattcggtcggcgagacgggccgcatgggttcgcccggccggcgc
gagatcggtcacggcaagctcgcctggcgcgctatccgtccggtgctgccgacggcggcg
gaattcccctacacgatccgcgtcgtctccgagatcaccgagtcgaacggctcgtcgtcg
atggcgacggtctgcggctcctcgctggcgctgatggacgccggcgtgccgctgaaggcg
ccgacagccggtatcgctatgggcctcatcctcgaaggcgagcgctttgccgtgctctcc
gacattctcggcgacgaggaccatctgggcgacatggacttcaaggtggcgggtaccgca
accggcatcacgtcgctgcagatggacatcaagatcaccggcatcaacgaggagatcatg
cgtgtcgccctcggccaggccaaggacgggcggctgcatatcctcggcgagatggccaag
gcgctcaccggcgcccgcgccgagctgggcgaattcgcgccgcgcatcgaaagcttcaag
atcgccaccgacaagatccgcgaagtgatcggcaccggtggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaagatcaatatcgaggacgacggcacggtgaaggtcgcctcg
agcgacgccaattccatcaaggcggcggtcgcctggatcaagtcgatcgcgatggacccg
gaaatcggccatatctacgagggtactgtcgtcaaggtggtcgaattcggcgcctttgtg
aacttcttcggctcgaaggacggcctcgtccacatctcgcaactcgccaagggccgcgtc
gccaagacctccgacgtcgtcaaggaaggcgacaaggtaaaggtgaagctgctcggcttc
gacgaccgcggcaaggtgcggctctcgatgcgtgtcgtcgatcaggtgacgggcgaagat
ctcgaagccaaagaaaaggccgccgacgccgacgtggcggagtaa
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