KEGG   Methylovirgula ligni: CWB41_08380Help
Entry
CWB41_08380       CDS       T05824                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlg  Methylovirgula ligni
Pathway
mlg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mlg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CWB41_08380 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlg03400]
    CWB41_08380 (ligD)
Enzymes [BR:mlg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CWB41_08380 (ligD)
DNA repair and recombination proteins [BR:mlg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CWB41_08380 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: QAY95753
LinkDB All DBs
Position
1731057..1733633
Genome map
AA seq 858 aa AA seqDB search
MALETYRKKRDFTVTSEPRGLKGRSSGNAFVVQKHDATRLHYDFRLELDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPEGQYGAGTVLVWDRGTWTPEGDPEKAYAKGH
LDFTLHGEKLKGRWHLVRMHPRPGEKRENWLLIKGEDDQARGPGDPDILEEEPNSVITGR
SLEDIAGDKKSRRWTSGKAAQPRVETPGSPRARAMAPVESIKSDPPAKKKRALPPVKRAP
FAFSPPKGAKRKALPDFIAPMLPTLVATPPSGAQWIHEVKFDGYRIEAVVKAGKVKLRTR
TGLDWADRFPTVAAAFAQLPVKDCIVDGEVVVEEANGISDFSALQNALSEGETGSMVYYA
FDLMHIDGYDLTGLPLVARKEILQSLLKATPDVILRYSDHFDENGELMLQHVCRLGAEGV
VSKKRESHYLSKRSTDWLKIKCANRQEFVIAGYVPSTTTRKAIGSLVLGYYENGKLRHAG
RVGTGYSSKMALDLFALLSRERIEKPAFESPLSSEARRNAVWVKPDRVAEVEFRGWTADA
NLRQASFKGLREDKNPKDIVRERVAPMAKEAEAPATSVTFTHRDRVYWPEAGVTKQGLAD
YYTMVWPWIEKYLLGRPLVLLRCPNGIVQGGFFQKHPWAGIDPHILQIHDPHEKEPILGI
DSFDGLMALVQSAALEIHPWGARSDDLDHPDRLIFDLDPGEGVAFAEIIAAAKEVRRRLA
EAKLKSFVKTTGGKGLHVVAPLTPRATWTVAKDFCRALADSMAHDAPQLYTATATKTQRP
KRIYIDYLRNARGATAVAPYSTRARPPAGISTPLTWDELDSVVSGSQFTIGNFSKRLQHL
AKDPWDGFFRLRQSLPGK
NT seq 2577 nt NT seq  +upstreamnt  +downstreamnt
ttggccctcgaaacctaccgcaagaagcgtgatttcactgtcacgtcggagccgcgcggc
cttaaggggcgttcgtccggcaatgccttcgtcgtgcagaaacacgacgcgacacggctg
cattacgatttccggctcgaactcgacggcgtcctcaagagctgggcggtgacgcgcggg
ccgagccttgtgccgggcgagaagcgcctcgccgtccatgtcgaggatcatccgctcgat
tacggctccttcgaggggacaattccggaggggcaatatggcgcgggcacagtgctggtc
tgggatcgtggcacctggacgccggagggcgatccggagaaagcctatgccaaaggtcac
ctggacttcacgcttcatggcgagaagctgaaaggccgctggcaccttgtccgcatgcac
ccgcgtccgggcgagaagcgcgagaattggctgctcatcaagggcgaagacgaccaagcg
cgcgggccgggcgatccggacatcctcgaagaggagccgaattcggtcatcaccggccgc
tcgcttgaagatattgccggcgacaagaagagtcggcgctggacctcggggaaggcggcc
cagccgcgggtcgaaacgcccggttcgccgcgcgcccgcgccatggcaccggtcgagagc
atcaaatcggatccgccagcgaagaagaagcgcgcattgccgccggtcaagcgggcgccg
ttcgccttctcgccgccgaaaggcgcgaagcggaaggcgctgccggatttcatcgcgccg
atgctgccgacgctcgtcgccacgccgccctccggagcgcaatggattcatgaggtcaaa
ttcgacggctatcgcatcgaggcggtcgtgaaggccggcaaggtgaagctgcgcacgcga
acggggctcgattgggccgaccgcttcccaaccgtcgccgctgctttcgcgcaattgccg
gtcaaggattgcatcgtcgacggcgaagtcgtggtcgaggaggcgaacggtatttcggat
ttctcggctctgcaaaacgcgctcagcgagggcgagactggtagcatggtctattatgcc
ttcgatcttatgcatatcgacggctacgatctgacgggtctgccgcttgtcgcgcggaaa
gagattctgcaatcgctgctgaaagccacgccggacgtgatcctgcgctacagcgatcat
ttcgacgaaaatggcgaactcatgctgcagcatgtttgccggctcggcgccgagggcgtc
gtctcgaagaagcgggagagtcactatctttccaagcgcagcaccgactggctgaagatc
aaatgcgccaaccggcaggaattcgtcatcgccggctatgtgccctcgacgacgacgcga
aaggccatcggctcgctcgtgctcggctattacgagaacggcaagctccgccacgccggg
cgcgtcggcacgggctattccagcaaaatggcactcgacctcttcgcgctgctctcgcgc
gagcggatcgaaaagccggcattcgagtcgccgctcagcagcgaggcgcggcgcaatgcc
gtctgggtaaagcccgaccgggtcgcggaggttgaatttcgcggctggacggcggatgcc
aatctgcggcaggcatcgttcaagggcttgcgcgaggacaaaaatcccaaggacatcgtt
cgcgaaagggtcgcaccaatggccaaagaagccgaggctcccgcgacgtccgtgacgttc
acccatcgcgaccgagtctattggcccgaggccggcgtcaccaagcagggccttgccgat
tattacacgatggtttggccgtggatcgaaaaatacctgcttggccggccgctcgtcctg
ctgcggtgtccgaacggcatcgtgcaaggcggcttcttccagaagcatccctgggccggg
attgatccccatattctgcaaatccacgatccacacgaaaaggagccaatcctcggcatc
gattcattcgacgggttgatggcactggtgcaatcggcggcgctcgaaatccacccctgg
ggcgcgcgcagcgacgacctcgatcatcccgatcgcctgattttcgatctcgacccgggg
gagggcgtcgccttcgcggaaatcattgctgccgcgaaagaggttcgccggcgtctggcc
gaagccaaactcaaaagcttcgtcaagacgaccggcggcaagggtcttcatgtcgtcgcg
ccgctgacgccccgcgcaacatggacggtggcgaaggacttctgccgggctctggccgat
tccatggcgcatgatgcgccgcaactctacactgcgacggcgacgaagacgcagaggccc
aagcgcatctatatcgactatctgcgcaacgcccgcggtgcgacagccgtcgcgccctat
tcgacgcgcgcgcggccgccggccggtatttcgacgccgcttacctgggatgaactcgac
agcgtggtgagcggcagccagttcaccatcggcaatttcagcaagcggctgcaacatctc
gccaaagatccgtgggacggatttttccggctgcggcagagcttgcccggcaaatag

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