KEGG   Melampsora larici-populina: MELLADRAFT_34116Help
Entry
MELLADRAFT_34116  CDS       T03138                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mlr  Melampsora larici-populina
Pathway
mlr03030  DNA replication
mlr03410  Base excision repair
mlr03420  Nucleotide excision repair
mlr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mlr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MELLADRAFT_34116
   03410 Base excision repair
    MELLADRAFT_34116
   03420 Nucleotide excision repair
    MELLADRAFT_34116
   03430 Mismatch repair
    MELLADRAFT_34116
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mlr03032]
    MELLADRAFT_34116
   03400 DNA repair and recombination proteins [BR:mlr03400]
    MELLADRAFT_34116
Enzymes [BR:mlr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MELLADRAFT_34116
    6.5.1.6  DNA ligase (ATP or NAD+)
     MELLADRAFT_34116
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MELLADRAFT_34116
DNA replication proteins [BR:mlr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MELLADRAFT_34116
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MELLADRAFT_34116
DNA repair and recombination proteins [BR:mlr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MELLADRAFT_34116
   NER (nucleotide excision repair)
    Other NER factors
     MELLADRAFT_34116
   MMR (mismatch exicision repair)
    Other MMR factors
     MELLADRAFT_34116
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 18927366
NCBI-ProteinID: XP_007406732
JGI: Mellp1_34116
UniProt: F4RC58
LinkDB All DBs
Position
Unknown
AA seq 695 aa AA seqDB search
MCTPAKKVPYSFLAEGFVSISATRSRLSITTILTNLLRTIIEHDPSSLLPTVYLITGHFG
PAYEGIELGIGSQILTKAIRAVSDVSHKELKALWNKHGDPGDVAFETRRSVRTLFSRTAQ
LTVQSVFDDLYNLSHLKGPGSVDTKVEVVKKLIVSAKGEEVRFLVRIMCRNLRIGAVKLT
VTSSLAQAFCLSRSSTTSSQNSSSIETNKPGRLETLKILTQAQKIVREVYVRHPNYDSII
PALLDEGSLETLSEKVPLAVGIPISPMLGQITRDLSDVEQRLKADEEFVAEWKYDGQRVQ
IHAKRDIFVRLFSRHLEDMTDKYPDVLDLVVALFERGKASESHEIICAIDPVTGQLKSFQ
SLANRSRKDVKIEDVDIQVGIFAFDLMYLNGKPLLAEAFRKRRSLLKDHLPPFVPTEGST
RCNLIARFDHVNSMESTVTKLQEVREFMLEAVANKCEGIMVKILDSQTSPSSMVMDQDVD
GNMEVSGSEEEDRMVGQDDQANLDSTVGAKRSRKKALLASYEPDKRADSWLKVKKDYGEL
GDSLDLVPIGAWHGQGRKASFWSPVLLALYDPESGGFQAVCKCISGFNDQFYKDLGARYT
KGTARCSAEKQLGYIESSGGHTPDVWFLPSEVWEIRGADITLSPVYKAAQGLIDPDRGLS
LRFPRFYRIRDDKGVEDASHPEDFAEMWRRQEKKA
NT seq 2088 nt NT seq  +upstreamnt  +downstreamnt
atgtgtacaccagctaagaaggtgccatatagctttcttgcagaaggttttgtatccatc
tctgctacgcgttcacgattaagcatcaccactatcttgaccaacttactccgaacaatc
attgagcatgacccatctagccttttacctacagtatatctcataactggccattttggc
ccggcgtacgagggtattgagctgggaattggatcccagatcttgactaaggctatcaga
gctgtttccgacgtgtcccacaaagagctcaaggcgctttggaacaaacatggtgatccg
ggtgatgttgcattcgaaactcgaagatcagtcagaacgctatttagtcgtaccgcacag
ctcactgtccaatcagtattcgatgatctatataatctttctcatttgaaagggcctggc
tctgtggacaccaaagttgaggttgttaaaaaacttatagtctctgccaagggggaagaa
gtcagatttctagttagaataatgtgccgaaaccttcggattggtgcagtcaagctgact
gttacatcatcattagcacaagctttctgcctcagccgatcatctaccacatcatcacag
aattcaagctctatagaaacaaataaacctggacgattggaaactttgaaaatactcaca
caagctcagaagatcgttcgagaggtttatgttcgacatccgaactatgattctattatt
ccagctctgcttgatgaaggcagtcttgaaacgctttctgaaaaggttcctttagctgta
ggaattccaatatctcctatgcttggacagatcactcgagacttgagtgatgttgagcaa
aggctaaaagcagatgaagaatttgtagctgagtggaaatacgatggacaacgcgtgcaa
atacacgccaaacgtgatatctttgtcagactatttagtcgtcatcttgaggatatgact
gataagtatccagatgttctggatttggttgtggccttgttcgagcgaggaaaagctagt
gaatctcatgaaataatatgtgcgattgatcctgtaacaggccagctaaaatcgttccaa
tctttggccaaccgtagtaggaaggatgtcaagatagaagacgttgatatccaagtagga
atctttgcattcgacttgatgtatctcaatggaaagcctctcttggccgaggcattccga
aagcgtagatcactattgaaagatcatcttccgccttttgtaccaaccgaaggatctaca
agatgcaacttgattgcacgtttcgatcatgttaattcgatggaatcaacagtgactaag
ttgcaagaagtccgtgaatttatgttggaagctgtggctaataaatgtgagggaatcatg
gtcaagattttggatagtcagacctcaccaagctccatggtgatggatcaggatgttgat
ggtaatatggaggtatcaggctcagaagaagaggatagaatggtaggacaagatgatcag
gccaatttggattcaacggttggggcgaagcgatcacgtaagaaagctttactagcaagt
tatgagcctgataaacgagcagatagttggcttaaagtcaaaaaagattatggagagttg
ggtgatagcttagacttggtacccattggtgcctggcatggtcaaggccgtaaggcgagc
ttctggtcaccagtcttgttagcgctttatgaccctgagagtggtggatttcaggcggtt
tgtaaatgtatatcaggattcaatgaccaattctataaagatctaggtgctcgctatacg
aaaggaacagctcgatgctctgctgagaaacaattaggttatattgaatcaagtggtggt
catacacctgatgtttggtttttaccaagtgaagtatgggaaattcgaggtgctgatatt
acgctaagtccagtgtataaggcggcgcaaggattaatagatccagatcgaggtctatca
ttaagatttccacgtttttatcgaatcagagatgacaagggcgtcgaagatgcatctcat
cctgaagatttcgctgagatgtggagaaggcaagaaaagaaagcataa

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