Melampsora larici-populina: MELLADRAFT_88142
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Entry
MELLADRAFT_88142 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MELLADRAFT_88142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_88142
Enzymes [BR:
mlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
MELLADRAFT_88142
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MELLADRAFT_88142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
Clp1
CLP1_P
PduV-EutP
Dynamin_N
AAA_28
AAA_16
MMR_HSR1
TniB
Motif
Other DBs
NCBI-GeneID:
18934782
NCBI-ProteinID:
XP_007411645
JGI:
Mellp1_88142
UniProt:
F4RQQ4
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MDQSAQPSLPTRSFKLLALHEYRFELDPAESISIRLVQGTAELFGFELAVGHDYPFGDEA
RAAIFSWHGADLEMSKVSTEYIAEETPVPTHLALHLALERMRLAAVAPKHFVPRVELPPS
LRTLEELNEDGDDERLGPRVMVVGGLSSGKSTLVKTLANLAIRSGRTKVEGPGLLLGAFT
LPGTFSIAPLYASIPTTTSVHPFGSTPTTGLPVLFTPANPFDAPLHPTPNPALFAPPLNA
LSFYYGHADFGRNLGLVDALFRRMGSALDARIEKGAETAAWTGGLIVDTPGEFCDKNRGA
IVKEAVRSFGINVIVVMGTEKLQLEMSKLMSTNKTVRVVRVPKSSGASEFDLLYQRRLQS
SQIRSYFYGGPALSQGQLSPFTIVVKFEDLMIYRVGEDALVPSSALPIGAIRTLKSTSLL
RIDPDEPRTGSLLHMVLAIPQSEWDGIDPETDEATEAATGPVLGFVHLAGMDLVKRKYTI
LSPLPGRLPRKAAIAGSLEWTDS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctgctcagccatcactaccgacgcgatctttcaaacttcttgcattgcat
gagtatcgctttgaactcgacccagcagagtcaatctctattcgactggtacaaggaacc
gctgaactatttggattcgaactcgctgtcggtcacgattatccatttggtgatgaagct
cgtgcagcaatcttcagttggcatggggctgatctcgagatgagcaaagtttctactgaa
tacattgcagaagagaccccagtaccaactcatctagctctccacctcgcgctggagcgg
atgagactggcggccgttgctcctaaacatttcgtaccacgcgttgaattgccgccatca
cttcgaacacttgaagaattgaatgaagatggtgatgatgagcgccttggacctcgtgtt
atggtcgttggtggactttcgagcggcaagtccacccttgtcaagaccctcgccaaccta
gccatccgtagtggtcgaaccaaagttgaagggccagggcttctgcttggagccttcacc
cttcccgggacattttcgatagctcctctttacgcgtccattcctaccaccacctctgta
catccattcggatccacaccgacaactggtctacctgttctcttcacacctgcaaatcct
ttcgatgctcctcttcacccgactcccaacccagcgctcttcgcacctcctctcaatgca
ttatcattctattacggtcatgccgatttcggaagaaatcttggcctagtagacgctttg
tttagaagaatgggttctgcattggatgctcggatcgagaagggggctgagacagcggct
tggactggaggattgattgtggatacacctggtgaattctgtgataagaatcgaggggcg
attgtgaaagaggccgtacgctcttttggaatcaacgtgattgttgtgatgggcactgaa
aaactgcaattagagatgtccaaactgatgtccacaaacaagactgtccgggttgttaga
gtgccaaagagtagtggggcatcagagtttgatctcctctatcagcgtcgtcttcaatct
agtcaaattcgatcttacttctacggcggtccggctttgtctcagggccagctgtcgcca
tttacgattgtagtaaagtttgaagatttaatgatatatcgtgtaggcgaagacgcactg
gttccatcttcggcgcttccgattggagccattcgaactttgaaatcaactagtctcttg
aggattgatccagatgagccacgtacaggttcattacttcatatggtccttgctattcca
caatcagaatgggatgggattgatcctgaaacagatgaagctacagaagcagctactggt
cctgtacttggatttgttcatttggcaggaatggatttggttaaaagaaagtatacgatc
ttgtcacctttaccgggtcgattaccacggaaagctgcgattgctggatcattggaatgg
actgatagttga
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