KEGG   Methanosarcina lacustris: MSLAZ_0929Help
Entry
MSLAZ_0929        CDS       T03822                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mls  Methanosarcina lacustris
Pathway
mls03030  DNA replication
mls03410  Base excision repair
mls03420  Nucleotide excision repair
mls03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mls00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSLAZ_0929
   03410 Base excision repair
    MSLAZ_0929
   03420 Nucleotide excision repair
    MSLAZ_0929
   03430 Mismatch repair
    MSLAZ_0929
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mls03032]
    MSLAZ_0929
   03400 DNA repair and recombination proteins [BR:mls03400]
    MSLAZ_0929
Enzymes [BR:mls01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSLAZ_0929
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSLAZ_0929
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSLAZ_0929
DNA replication proteins [BR:mls03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSLAZ_0929
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSLAZ_0929
DNA repair and recombination proteins [BR:mls03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSLAZ_0929
   NER (nucleotide excision repair)
    Other NER factors
     MSLAZ_0929
   MMR (mismatch exicision repair)
    Other MMR factors
     MSLAZ_0929
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AKB74190
UniProt: A0A0E3WSC3
LinkDB All DBs
Position
complement(1154043..1155749)
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMAIQSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFLEEQPELS
ITEVYHRFKTASEASGKGSQEVKVRNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPADVVEHALMVTNDLGIVAAAAKKGGVDALKTLGIEINRPIKMMLSQISPD
IDADIRAMKEAAIEWKFDGARVQIHKSGNSVTIFSRKLENVTNSLPDLVEIVRKHVKAES
AILDGEAVAVDENGRPKAFQEILKRFRRKYDVEEKMLGIPIQLNLFDIMYLNGRTLIDLS
LVERRKELESCVESSVEDSKSICVDKQVITGDLEVVEKIYREALRAGHEGVMVKNPNSLY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGFGRRANLIGSYSVACYDPETSRFMQIGKVGT
GLNDEQLKELTEMLSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYNSGFALRFPRFI
RIRDDKDPEEADTIQRIGRVYSQQMKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaacctgccaggcgattgaaaaaatatcgagtact
atagaaactacaaataaggttgctgaccttctcaaaaaggttgacgtcgaagagctgcct
cttgcaactcactttattatgagtgaggtttttcccgcatggagtggagaacagctcggg
attggcacaagcctgctttatgtttccctttccaaagcctcaggcatggctatacaaagt
atagaatctcttatccggaccactggcgacattggggacacagcactccttattttgaaa
gaaaaacgaaaaaaccaggtgacattttcttcttttctcgaagagcagccagagctttca
ataactgaggtttaccatcgtttcaagactgcttccgaagcttccggaaaaggctcacag
gaagttaaagtcagaaaccttcagtttctatttacttcatcaaccccgagggaagcgaaa
tacatctccaggcttgcccttgaagaactccgcataggcgtaggggaaggagttgtaaga
gatgccattgcaaaggccttttccgtccctgcagatgtagtcgaacatgccttaatggtc
acaaacgacctcggaatagtggctgcagctgccaagaaaggtggggtcgacgccctcaag
actctcgggattgaaattaaccgtcccataaagatgatgctttcgcagatcagccctgat
atagatgccgatattagagctatgaaggaagctgcaattgagtggaaatttgacggggca
agagtccagatccacaagagtggaaattcggtaactattttttcacggaagcttgaaaac
gtcacaaattccctccctgaccttgtagaaatagtccggaaacatgtaaaagctgagtcc
gcaatccttgacggagaagctgttgcagtagacgaaaatgggagaccaaaagcctttcag
gagatccttaagcgtttccggcgcaaatacgatgttgaagaaaaaatgctcggaattcct
attcagctcaacctctttgacatcatgtacctgaacggcagaaccctgattgacctttct
cttgttgagcggcgaaaagagcttgagtcctgtgtggagagctcagttgaggactcaaaa
tccatttgcgtggacaagcaggtgataaccggagacctcgaggttgtggaaaagatctac
agggaagccttaagagccgggcatgaaggcgtcatggtcaaaaatcctaactcgttatat
tcccctggcaagcgtggcaaaaactggctgaagaaaaaaccccttatggaaacccttgac
cttgtggtcgtgggggcagaatggggctttgggcgcagggcaaacctgataggctcgtat
tcagttgcctgctatgaccccgaaacctctcgcttcatgcagatcggcaaggttggcaca
gggcttaacgatgagcagttaaaagaactcacagagatgctctcagggctaatggaagga
ggggaagccggaggggtatttgcaataaggccaaaggttgttctggaaatagcctttgaa
gaaatccagaaaagccccaactacaactcaggctttgcactgcgttttccccgcttcatc
cgcatccgggacgataaagaccccgaagaagcggatacgatccagcggatcgggcgtgta
tacagccagcagatgaaaaggctctga

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