KEGG   Methanosarcina mazei C16: MSMAC_1123Help
Entry
MSMAC_1123        CDS       T04626                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmac  Methanosarcina mazei C16
Pathway
mmac03030  DNA replication
mmac03410  Base excision repair
mmac03420  Nucleotide excision repair
mmac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSMAC_1123
   03410 Base excision repair
    MSMAC_1123
   03420 Nucleotide excision repair
    MSMAC_1123
   03430 Mismatch repair
    MSMAC_1123
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmac03032]
    MSMAC_1123
   03400 DNA repair and recombination proteins [BR:mmac03400]
    MSMAC_1123
Enzymes [BR:mmac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSMAC_1123
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSMAC_1123
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSMAC_1123
DNA replication proteins [BR:mmac03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSMAC_1123
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSMAC_1123
DNA repair and recombination proteins [BR:mmac03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSMAC_1123
   NER (nucleotide excision repair)
    Other NER factors
     MSMAC_1123
   MMR (mismatch exicision repair)
    Other MMR factors
     MSMAC_1123
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase VP40
Motif
Other DBs
NCBI-ProteinID: AKB71013
UniProt: A0A0E3RYE8
LinkDB All DBs
Position
1357423..1359129
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPVATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMSIHSIESLVRTTGDIGDTALLILKEKRKNQVTFSSFFEEKPELS
ITEVYRRFKIASEASGKGSQDIKVKNLQFLFTSSSPREAKYIARLALEELRIGVGEGVVR
DAIAKAFSVPAEIVEHSFMVTNDLGIVAAAAKKGGVEALERLGIEINRPIKMMLSQISPD
IDADIRAMKEVAIEWKFDGARVQIHKDGNSVTLFSRKLENVTSSLPDLVEIVRKHVKAES
AILDGEAVAVDENGVPRAFQEILKRFRRKYDVREKALGIPIQLNFFDIMYINGKTLIDLP
LLERRKALESCVESSVEDSKSISVAEQVITGDLELVEKIYREALKAGHEGVMVKNPNSVY
SPGKRGKNWLKKKPLMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGT
GLTDDQLKELTEILSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGRVYSQQLKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacgtgccaggcaattgaaaaaatatcaagcact
atagagaccacaaataaggttgccgaccttctcaaaaaggttgatgttgaagagcttcct
gttgccactcattttattatgagtgaggtttttcctgcctggagtggggaacagctcggg
attggcacaagcctgctttacgtttctctttccaaagcctcaggcatgtccatacacagt
atagaatctcttgtccggacgaccggagatataggggatacagcactccttatccttaaa
gaaaaaagaaaaaatcaggtgacattctcttctttctttgaggaaaagccagagctatca
ataacagaggtttacaggcgttttaagatcgcatcagaagcttctggaaaaggttcacag
gatattaaggtcaaaaacctccagtttctgttcacttcatcaagtcctagggaagcaaaa
tacatcgcaaggcttgcgcttgaagagctcaggataggcgtgggagaaggagttgtcagg
gacgctattgcaaaagctttttctgttcctgcagagattgtggaacattccttcatggtt
acaaatgacctcggaatagtggctgcagcggctaaaaaaggaggggttgaagctctcgag
agactcgggatagaaattaaccgccctatcaagatgatgctttctcagatcagccctgac
atagatgctgatataagagccatgaaggaggttgcaattgaatggaaatttgatggggcc
agggtccagatccacaaggacggaaattccgtaactcttttttcgcgtaaacttgaaaat
gttaccagttccctccctgacctcgttgaaatagtccgaaaacatgtaaaagctgagtca
gcgatccttgacggagaagccgtagctgtggacgaaaatggggttccaagggcttttcag
gaaattctcaagcgtttcaggcgaaagtacgatgtcagggaaaaggcactcggaattcct
atccagctcaacttttttgacattatgtacatcaacggcaaaactttgatagatctcccg
cttctcgagaggaggaaagctcttgagtcctgtgttgagagttctgtcgaggactcaaag
tccatttccgtggctgagcaggtcataaccggagaccttgagcttgtggagaagatctac
agggaagccttaaaagccgggcatgaaggagttatggttaaaaacccgaattccgtttat
tctcctggaaaacgcggaaaaaactggctcaagaaaaaacctctcatggacactcttgac
cttgtaattgtcggagctgaatggggtttcgggcgcagggcaaacctgatcggctcttat
accgttgcctgttacgaccccgatactactcgcttcctgcaggtaggcaaggtcggcacg
gggcttacggacgatcagctaaaagagcttacggaaatactctcagggctaatggaaggc
ggagaagccggaggagtatttgctatcaggccaaaggttgtccttgaaatcgcttttgag
gaaatccagaaaagccccaactacgactcgggttttgcacttcgttttccccgtttcatc
cgcatccgtgacgataaagacccggaagaagcggatactatccagcggatagggcgcgta
tacagtcagcagctgaaaagactgtaa

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