KEGG   Mycobacterium marseillense: CKJ54_04600Help
Entry
CKJ54_04600       CDS       T05049                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmal  Mycobacterium marseillense
Pathway
mmal03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CKJ54_04600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmal03400]
    CKJ54_04600
Enzymes [BR:mmal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CKJ54_04600
DNA repair and recombination proteins [BR:mmal03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CKJ54_04600
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C Met_10 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ASW89260
LinkDB All DBs
Position
900439..902715
Genome map
AA seq 758 aa AA seqDB search
MSSTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTQIAEVMIPHVAGRPATRKRWPNGVEQ
ESFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDDPAGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGAATRLVFDLDPGERVTMAQMANVARAVRDLMAGIGLTTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLARVARDGDLLAELDASDKQAPVP
DRLTKYRSMRDASKTPEPVPVTKPAVGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAVP
KNLPETPSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIV
NLHGAKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGK
WDGYRLLIEIDHGSFRVRSRRGREVTQEYRELRWLADGLAEHHVVLDGEAVVLDSSGVPN
FHEMQNRGKGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSNLIVPDLLPGDGK
EALEHSGERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEIVIGGWKAGEGGRSSGIG
SLLMGIPSAGGLRFAGRVGTGFTERDLAKLKKTLAPLHTDESPFDPPLPRSEARGVTYVR
PVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq 2277 nt NT seq  +upstreamnt  +downstreamnt
atgagttcgacggcggggccgcgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcagatcgccgaggtgatg
atcccccacgtcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgaaaagcaactggcctcgtcggcccctgactggctgccacgcgccagc
gtgacccaccgatccggaacgacgacctatccgatcatcgacgaccccgccggcctggcc
tggatcgcccaacaggcggcgctggaagtccacgtgccgcagtggcgattcgtcgccgag
tggacccgcagccgggccgaagaactcaaaccgggcgcggcgacgcgattggtgttcgac
ctcgaccccggtgaacgcgtgacgatggcacagatggccaacgtggcgcgcgccgtccgc
gacctgatggccgggatcggactgaccaccttcccgctcaccagcggcagcaagggcctg
cacctgtacgcgccgctcgacgagccggtgagcagcaaaggcgccacggtactggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagctggtcacctcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacg
atcgcgccgtactcgctgcgcggacgcgaacatccgaccgtcgcggctccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagttgcggtacgacgaagtcctggcccgggtc
gcgcgcgacggcgatctgcttgcggagctggacgcctcggataagcaagccccggtgccc
gatcggctgaccaagtaccgcagcatgcgcgacgcgtccaagaccccggagccggtcccg
gtgacaaaacccgctgtcgggcaagggaattcctttgtcattcaagagcaccatgcgcgg
cggctgcactacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgccc
aagaacctgcccgaaacgccgtcggtgaaccacctggcggtccacaccgaggatcatccg
ctcgaatacggcgggttcgagggcgtcatccccaagggcgaatacggtgcgggcaaggtg
atcatctgggactccggaacctacgacgccgaaaagttcctcgacgatgaggtcatcgtc
aacctgcacggcgccaagatctccggccgctacgcgctgattcaaaccaacggcgaccag
tggctggcgcaccggatgaaggaccagaaggtcttcgagttcgacacgatcgcccccatg
ctcgccacccacggctcggtgacggcactgaaggcaggccagtgggcgttcgagggcaag
tgggacggttaccggctcctgatcgaaatcgaccacggctcctttcgggtacggtcgcgg
cgcggccgcgaagtcacccaggagtaccgtgaactccgttggctggcagacggtctcgcc
gaacatcatgtggtgctcgacggcgaggccgtcgtgctggactcctccggggtgcccaac
ttccacgagatgcaaaaccgcggcaagggctcacgggtcgaattctgggcgttcgacctg
ctctacctcgacggccgttcgttgctgcgggcccgctaccgcgatcggcgaaagctgctg
gaaatgctggccgccggcagcaacctcatcgtccccgacctgctgccgggtgacggcaaa
gaggcgctggagcactccggggagcgcggctgggagggagtgatcgccaagaagcgcgac
tccacttatcagccgggccgccgttcgtcgtcgtggatcaaggacaagcactggaacact
caggagatcgtcatcggcggttggaaagccggcgaaggcggacgcagcagcggcatcggc
tcactgctgatgggtatccccagcgcgggcgggctgcgtttcgccgggcgcgtcggcacc
gggttcaccgaacgcgacctggccaagttgaagaagacgctggcgccgctgcacaccgac
gaatcccccttcgacccaccgcttccccgaagcgaagctcgcggcgtgacgtatgtgcgg
ccggtgctggtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaa
tcgagttggcgcgggctgcgaccggacaaggaggcaagtgaggtggtgcgcgagtga

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