KEGG   Mycobacterium marseillense: CKJ54_17885Help
Entry
CKJ54_17885       CDS       T05049                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmal  Mycobacterium marseillense
Pathway
mmal03030  DNA replication
mmal03410  Base excision repair
mmal03420  Nucleotide excision repair
mmal03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CKJ54_17885
   03410 Base excision repair
    CKJ54_17885
   03420 Nucleotide excision repair
    CKJ54_17885
   03430 Mismatch repair
    CKJ54_17885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmal03032]
    CKJ54_17885
   03400 DNA repair and recombination proteins [BR:mmal03400]
    CKJ54_17885
Enzymes [BR:mmal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CKJ54_17885
    6.5.1.6  DNA ligase (ATP or NAD+)
     CKJ54_17885
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CKJ54_17885
DNA replication proteins [BR:mmal03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CKJ54_17885
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CKJ54_17885
DNA repair and recombination proteins [BR:mmal03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CKJ54_17885
   NER (nucleotide excision repair)
    Other NER factors
     CKJ54_17885
   MMR (mismatch exicision repair)
    Other MMR factors
     CKJ54_17885
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ASW93118
UniProt: A0A249BFG6
LinkDB All DBs
Position
3855157..3856698
Genome map
AA seq 513 aa AA seqDB search
MLLLDVATASTDVGSTSSRLRKIAHIADLLARAAPDSAQVTIVVSWLSGELRQRQIGVGW
AALRSRPPPASDATLTVGGVDATFSEIGAVSGKGAQARRAALLAALFAAATDTEQTFLLR
LLSGELRQGALAGIMADAVAKAAGIPAAAVQRAAMLGGDLPAVAAAALSGPLPGSAAALD
AFTLRVGRPVGPMLAQTATSAADAIERHGGQAIFEAKLDGARVQIHRAGDEVTVYTRSLD
DVTARLPEVVEATLALPVDTLIADGEAIALRPDNRPQRFQVTASRFGRSVDVAAAVAAQP
LSVFFFDILHRDGVDLLDAPTTDRLAALDALVPSAQRVDRLRTSDPAAAGGFLDATLAAG
HEGVMAKAPNAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGAREPD
SGEFLMVGKTFKGMTDAMLDWQTARFSELAIGGTDGYVVRVRPEQVVEVALDGVQKSSRY
PGGLALRFARVVRYRDDKSPAEADTIDTVRALY
NT seq 1542 nt NT seq  +upstreamnt  +downstreamnt
gtgctcctcctcgacgtggcaacggcgtccaccgacgtcggaagcacgtcgtcgcggctg
aggaaaatcgcccacatcgccgacctgctggcccgggccgcacccgattccgcccaggtc
acgatcgtcgtgtcctggctgtccggcgagttgcggcaacgccagatcggcgtcggttgg
gcggcgttgcgttcgcgcccgccgccggcctccgacgccacgctgaccgtcggcggcgtc
gacgccaccttctccgagatcggcgccgtgtcgggcaaaggcgcccaggcccgccgcgcc
gcgctcctggccgcgttgttcgccgctgccaccgataccgagcagacatttctgctgcgg
ctgctcagcggcgagctgcgccaaggcgcgttggccggaatcatggccgacgcggtggcc
aaggccgctgggattcccgccgccgcggtgcagcgcgccgcgatgctgggcggcgacctg
cccgcggtcgcggccgcggccctgtccggtcccttgcccggctccgcggcggccctggac
gccttcacgctgcgggtcggccgtccggtcggccccatgctggcgcagaccgccaccagc
gcggccgacgcgatcgaacgccacggcgggcaggcgatcttcgaagccaagctggacggg
gcgcgcgtgcagatccaccgcgccggcgacgaggtcaccgtctacacccgaagcctcgac
gatgtcaccgcccggctgcccgaggtggtggaggcgacgctggcgttgccagttgacacc
ctcatcgccgacggcgaggcgatcgcgctgcgcccggacaatcggccgcagcgcttccag
gtcaccgcctcccggttcggccgctcggtcgatgtcgccgcggccgttgccgcgcaaccg
ctttcggtgttcttcttcgacatcctgcaccgcgacggcgtcgacctactcgacgcgccg
accaccgaccggctggccgccctggacgcgctggtgccgtccgcgcagcgggtcgatcgg
ctacgcacctccgaccccgcggcggcgggcggcttcctggacgcgacgctggccgccggc
cacgagggcgtgatggcgaaggcgccgaatgcgccgtatcaggccggtcgccgcggggcg
ggctggctgaaggtcaagccggtgcacaccctggacctggtggtgctcgcggtggagtgg
ggatcggggcgccgccgcggcaagctctccaatatccatttgggcgcccgcgagccggac
agcggcgaattcctcatggtgggaaagactttcaagggcatgaccgacgccatgctggac
tggcagaccgcccggttcagcgaactggccatcggcggcacggacggctacgtcgtgcgc
gtgcggcccgagcaggtggtcgaggtggccctggacggcgtgcagaagtcgtcgcgctac
cccggtgggctggcgctgcggttcgcccgcgtggtgcgctatcgcgacgacaagagcccc
gccgaggccgacaccatcgacaccgtgcgcgcgctgtactga

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