Mycobacterium sp. MCS: Mmcs_1881
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Entry
Mmcs_1881 CDS
T00367
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mmc
Mycobacterium sp. MCS
Pathway
mmc03030
DNA replication
mmc03410
Base excision repair
mmc03420
Nucleotide excision repair
mmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mmcs_1881
03410 Base excision repair
Mmcs_1881
03420 Nucleotide excision repair
Mmcs_1881
03430 Mismatch repair
Mmcs_1881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmc03032
]
Mmcs_1881
03400 DNA repair and recombination proteins [BR:
mmc03400
]
Mmcs_1881
Enzymes [BR:
mmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mmcs_1881
DNA replication proteins [BR:
mmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mmcs_1881
DNA repair and recombination proteins [BR:
mmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mmcs_1881
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mmcs_1881
MMR (mismatch excision repair)
DNA ligase
Mmcs_1881
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mmcs_1881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
ABG07990
UniProt:
Q1BAU4
LinkDB
All DBs
Position
2026067..2028172
Genome browser
AA seq
701 aa
AA seq
DB search
MSAKSTPDAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQL
EALEAEHPELRAPDSPTQLVGGAGFATDFTPAEHLERMLSLDDVFNVDELTAWSSRVRAE
VGDDAAYLCELKVDGLALALVYRDGRLERAATRGDGRVGEDVTLNARTLDDVPERLTPSD
EFPHPAVLEVRGEVFFRVADFEALNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRPL
RMVCHGIGYTEGFSPTSLHEAYGALRAWGLPVSDHTTRVQGMDAVRERIAYWGEHRHDIE
HEIDGVVVKLDQIALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTGRVTPFA
YMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGTERE
FVMPTHCPECGTELAPAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGLGYEAAI
ALLQAGVITDEGDLFTLTEDDLLRTELFTTKGGAVSANGRRLLANLGKAKAQPLWRVLVA
LSIRHVGPTAARALATEFGSLDAIIEASEDQLAAVEGVGPTIAAAVKEWFTVDWHCAIVE
KWRAAGVRMADERDASIARTLEGLSIVVTGSLAGFSRDEAKEAIIARGGKAAGSVSKKTA
YVVAGDSPGSKYDKAIDLGVPVLDEDGFRNLLENGPQAPEG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgaagtcgaccccggatgccgggccgcaggagcaggccaccgaagccgaggcc
gaactgcgccaccgttggcaggcgctcgccgacgaggtccgcgaccaccagttccggtac
tacgtgcgcgacgccccggtcatctccgacgccgacttcgacaagctcttccagcaactc
gaagcgctggaggccgaacatcccgagctgcgcgccccggattcgccgacccaactggtg
ggcggcgccgggttcgccaccgacttcaccccggccgaacatctggagcggatgctgagc
ctcgacgacgtcttcaacgtcgacgagctgaccgcctggtcgagccgggtgcgcgccgag
gtcggcgacgatgcggcgtatctgtgtgagctcaaggtcgacggcctggcgctggcgctg
gtgtatcgggacggacggctggaacgcgccgcgacgcgcggtgacggccgggtcggcgag
gacgtcacgctcaacgcccgcaccctcgacgacgtgcccgaacggctgaccccgtccgac
gagttcccccacccggcggtgctggaggtccgcggtgaggtgttcttccgggtcgccgac
ttcgaggcgctcaacgcggggctggtcgccgaggggaaaccgccgttcgccaacccgcgg
aacagcgccgccggctcgttgcggcagaagaatccggcggtcacggcgcgccgcccgctg
cggatggtgtgtcacgggatcggctacacggaggggttcagtccgaccagcctgcacgag
gcgtacggagcgctgcgggcctgggggctgccggtgtccgaccacaccacccgggtgcag
ggtatggacgcggtgcgggagcgcatcgcgtactggggcgagcaccgtcatgacatcgaa
cacgagatcgacggtgtggtcgtcaaactcgaccagatcgctttgcagcgccggctcggg
gcgacctcgcgcgcgccacggtgggcggtggcctacaagtatccgcccgaggaggcgcag
accaagctgctcgacatccgggtcaacgtcggccgcaccggccgcgtgacgccgttcgcc
tacatggaaccggtgaaggtggccggctccaccgtgggcctggcgacgctgcacaacgcc
tcggaggtcaaacgcaagggtgtgctcatcggcgacaccgtggtgatccgcaaggccggt
gacgtcatccccgaggtgctggggcccgtcgtcgatctgcgcgacggcaccgaacgcgag
ttcgtgatgccgacgcactgccccgaatgcggcaccgaactcgccccggccaaggagggc
gacgccgacatccgctgcccgaactcgcgcacgtgtccggcgcagttgcgggagcgggtg
ttccacgtcgccgggcgcggcgccttcgacatcgagggtctcgggtacgaggcggccatc
gcgctgctgcaggccggtgtcatcaccgacgagggcgacctgttcacgctgaccgaggac
gacctgctgcgcaccgagctgttcaccacgaagggtggcgccgtatccgccaacggccgc
cggctgctggccaacctcggcaaggccaaggcgcagccgctgtggcgggtgctggtcgcg
ttgtccatccgccatgtcgggccgacggcggcgcgggcgctggccaccgaattcggcagt
ctcgacgcgatcatcgaggcctccgaggaccagctcgccgcggtggagggtgtggggccg
acgatcgccgccgcggtcaaggagtggttcacggtcgactggcactgcgcgatcgtcgag
aagtggcgcgccgcgggggtgcggatggccgacgaacgcgacgccagcatcgcccgcacg
ctggaggggttgtcgatcgtcgtcacagggtcgctggccgggttctcccgcgacgaggcg
aaggaggcgatcatcgcccgcgggggcaaggcggccggttcggtgtcgaagaagaccgcg
tacgtggtcgcgggcgactcaccgggttccaagtacgacaaggcgatcgatctcggtgtg
ccggtgctcgacgaggacggattccggaacctgctggagaacgggccgcaggcgccggag
ggctag
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integrated database retrieval system
