KEGG   Mycobacterium sp. MCS: Mmcs_4352Help
Entry
Mmcs_4352         CDS       T00367                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmc  Mycobacterium sp. MCS
Pathway
mmc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Mmcs_4352
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmc03400]
    Mmcs_4352
Enzymes [BR:mmc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mmcs_4352
DNA repair and recombination proteins [BR:mmc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Mmcs_4352
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABG10457
LinkDB All DBs
Position
complement(4630552..4632828)
Genome map
AA seq 758 aa AA seqDB search
MVDHFGRVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGEL
EFFEKQLASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGSG
GDLTPGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLTAYPLTSGSKGLHLYVPL
KEPISSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSL
RGREHPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSM
RDPSRTPEPVPPLPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSE
NHLAVHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVII
TLHGNRIDGRYALIQTDGKNWLAHRMKDQGNPTFEDFAPMLATHGSVEKFTAKQWAFEGK
WDGYRLLVDADHGKLCLKSRSGRDVTAEYPQLRALAADLADHHVVLDGEVVALDDKGVPS
FGHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGL
EALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIG
ALVLGIPGPDGLQFVGRVGTGFTEKELGSLKKTLAPLHTYESPFATRLPTQDAKGVTFVR
PELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE
NT seq 2277 nt NT seq  +upstreamnt  +downstreamnt
gtggtggatcacttcggtcgggtgcgcctgaccaacccggacaaggtgctgtacccggcg
acgggcaccaccaaggccgaggtgttcgagtactacgtcgacgtggccgaggcgatggtg
ccgcacatcgccggccgggcggtcacccgtaagcgctggcccaacggcgtcggcgagctg
gagttcttcgagaagcagctggccagctccgcacccgactggctcgcgcgcggcacgatc
gtgcacaaatccggcaccaccacctacccgatcatcgacacccgcgaaggtctggcgtgg
atcgcgcagcaggccgcgctggaggtgcacgtgccgcagtggcggttcgtcggatcgggt
ggcgacttgactcccggcccggccacccgcatcgtgttcgacctcgaccccggcgagggc
gtcacgttccgtcagctgtgcgaggtcgcgcacgaggtccgcgacctgatcaccgacatc
gggctcacggcctatccgctgaccagcggcagcaagggcctgcacctctacgtcccgctc
aaggagccgatcagctcccagggcgcgtcggtgctcgctaaacgcgtcgcccaacagctc
gagaaggccatgcccaaacaggtcaccgccacgatgaccaagagcctgcgcgagggcaag
gtgttcctcgactggagccagaacaacggcaacaagaccacgatcgcgccgtactccctg
cgcggccgcgagcatccaacggttgcggcgccgcgcacctgggaggagatcgaggacccc
gacctgagacatctgcgattcgacgaagtgctcgagcggatcgaggagttcggggacctg
ctggccgatctcgacgagtacgtgcctgtcgaggaccggctcaccaagtaccgcagcatg
cgcgacccgtcgaggacgccggagcccgtgccgccgctaccgccgaaggccggcaacaac
gaccgcttcgtgatccaggaacaccatgcccggcggctgcactacgacctgcgtctggaa
cgcgacggtgtgctggtcagctgggcggtgccgaagaacctgcccgaccggccctcggag
aaccacctcgccgtgcacaccgaggaccatccgatggagtacctcaccttccacggcacc
atcccgaagggtgagtacggcggcggcgacatgatcgtctgggacaccggcacgtatgag
accgagaagttcaacgaccacgccccggacggacccgccaagggcggggaggtcatcatc
accctgcacggcaacaggatcgacggccgttacgcactgatccagaccgacggcaagaac
tggctcgcgcaccggatgaaggatcagggcaacccgacgttcgaggacttcgcgcctatg
ctggccacccacggctcggtcgagaagttcacggcgaaacagtgggcgttcgaaggcaag
tgggacggctaccggctgctggtcgacgccgaccatggcaagctgtgcctgaagtcccgc
agcggccgcgacgtcaccgcagaatatccccaattgcgcgcgctggcagcagatctcgcc
gaccaccatgtcgtgctcgacggggaggtcgtcgccctcgatgacaagggcgtgccgagc
ttcggccatatgcagaaccgggcccggtccacccgtgtcgagttctgggcgttcgacatc
ctgcgcctcgacggccgttggctgctgaaggcgaagtaccgagaccgccgaaagctgttg
gagacgttggccagtgggggcggactgatcgtgcaacccctactcgacggcgacggcctc
gaggctctcgaggacgcccgcaaacgcaggtgggagggtgtggtcgccaagaaatgggat
tccacctatcagccggggcggcgctcgtcggcgtggatcaaggacaaactgtggaacacc
caggaggtcgtgatcggcgggtggcgcgaaggcaacggcggccgcagcagcggcatcggc
gcactggtgctcggcatccccggacccgacggcctgcagttcgtcggccgagtcggcacc
gggttcaccgagaaggaactcggcagtctcaagaagacgttggcgccgctgcacacctac
gaatcccccttcgcgacaaggcttcccacccaggacgccaagggcgtgacgttcgtgcgg
cccgaactcgtcggcgaggtgcgttacagcgagcgtaccggcgacggccggttgcgccaa
ccgtcctggcgggggctgcgaccggacaagacgccggacgacgtcgtgtgggagtag

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