KEGG   Martelella mediterranea: Mame_02200Help
Entry
Mame_02200        CDS       T04757                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmed  Martelella mediterranea
Pathway
mmed03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmed00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Mame_02200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmed03400]
    Mame_02200
Enzymes [BR:mmed01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mame_02200
DNA repair and recombination proteins [BR:mmed03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Mame_02200
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AQZ51535
UniProt: A0A1U9Z1F8
LinkDB All DBs
Position
2364681..2367173
Genome map
AA seq 830 aa AA seqDB search
MAAPDTLAEYETRRDFEKTKEPKRGRARKSRSGDLKFVVQKHDARRLHFDFRLEWDGVLL
SWAVTRGPSDDPGEKRLAVRTEDHPLDYADFEGTIPKGQYGGGTVMVWDTGSWEPLHDPD
EGLKQGKLHFRLKGERMQGGWALVRMRGRRGEKRENWLLIKERDDKAGEEPDRLTEDFED
SVTTGRSFSEIEAGHDVWKRRTKKPTDKQEPQKKKPRVKAKFPAFRKPQLATLYDEAPDG
EDWIHETKFDGYRCIAALSNGEARFYTRSGKDWTEKYGDLAEAFAPLEGESLLIDGEIMA
ASVPKDGSAFSALQAALQDGAPLIFYVFDILERDGKSLTDLPLSERKQALEEALSPLDTE
KGPIRLSTWVEGDGRDILAKICKAGGEGIVSKRADARYRHTRTSAWRKIKCSRRQEFVIG
GYSPSTKKGRPFASLLIGQYDDDGVFCYRGRVGTGFDEKTLDDLGDRLKRLARKTAPFAE
VPRAIARDARWVTPKLAAEIDFAEFTADGHVRHGAFLGLREDKEAGAVQAEKAKGDKVAG
IEITHPDRQLYGKAGVTKADVARHYAAVGSRMLEIAGRRPVSLFRCPSGIDGESFFQKHA
GKGFPDELARIDIEEKDGDTGEYLYAKDVTGFVAAAQMGTIEFHGWGARADRIEAPDRLI
FDLDPDEGLGFTETKKAAFEMREALSDIGLKSTAMVTGGKGIHVIVPLKRTVSWDTVKAF
ARTFAHMMAEEDPERYIATMSKEKRKNRIFIDWLRNERGATAILPYSLRARPNASVATPV
TWEELNDLKSAATFTIGDMAGRLKGRDPALAVKPQTLGKAVIGRLEKRVG
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggccgcccccgacacgcttgccgaatacgaaacccgtcgcgactttgaaaagacgaag
gagcccaagcgcggccgcgcccgcaagagccgctccggcgacctcaaattcgtggtgcag
aagcacgacgcccgccggctgcatttcgatttccggctggagtgggacggcgtgctttta
agctgggcggtcacccggggcccgagcgacgaccccggcgaaaagcggctggcggtgcgc
accgaggaccatccactcgactatgccgatttcgagggcaccattcccaaggggcaatat
ggcggtggcacggtgatggtgtgggacaccggaagctgggagccgctgcatgaccctgat
gaggggctgaagcagggcaagctgcatttccgcctgaagggcgagcgcatgcagggcggc
tgggcgctggtgaggatgcgcggccggcgcggcgagaagcgcgagaactggctgctgatc
aaggagcgcgacgacaaggccggtgaggagcccgaccggctgacggaggacttcgaggac
agcgtcaccaccggccgctccttcagcgagatcgaagccggccacgatgtgtggaaacgc
cgcacgaaaaagcccactgacaagcaggaaccgcagaagaaaaagccgcgcgtaaaggcg
aaattccccgccttccgcaaaccccagctcgccacgctctatgatgaagcgcccgacggc
gaggactggatccacgaaaccaagtttgacggctaccgctgcatcgccgccctcagcaat
ggcgaggcgcggttctacacccgctccggcaaggactggacggagaaatatggcgatctg
gccgaggccttcgcgccgcttgagggcgaaagcctgctgattgacggcgagatcatggcg
gcctcggtgccgaaggatggctccgccttttccgccctgcaggcagcgcttcaggatggc
gcgccgctgattttctacgtcttcgacattctggagcgcgacggcaaatcgctgaccgac
ctgccgctgagcgagcgcaaacaggcgctggaggaggcgctgtcgccgctcgataccgaa
aaggggccgatccggctttccacttgggtcgagggcgatggccgggatatcctggcaaaa
atctgcaaggccggcggcgaggggatcgtgtcgaagcgggcggatgcgcgctatcgccac
acccgcaccagcgcgtggcgcaagataaaatgctcgcgccggcaggaattcgtgatcggc
ggctattcgccgtctacgaagaaaggccggccctttgcctcgctcctcatcggccagtat
gatgatgacggcgtgttctgctatcgcggccgcgtcggcacggggtttgacgagaaaacg
ctggatgatctcggcgaccggctgaagcgccttgcccgcaagaccgcgccttttgccgag
gtgccgcgcgcgattgcccgcgatgcgcgctgggtgacgccgaagcttgcggcggagatc
gatttcgccgagttcaccgccgatggccatgtccgccacggcgcgtttctgggcttgaga
gaggacaaggaggctggcgcggtgcaggcggagaaagcgaagggcgacaaagtcgccggc
atcgaaatcacccatccggaccgccagctttacggcaaggccggcgtcaccaaggccgat
gtcgcgcgccattacgcggcggtcggcagccgcatgctggagatcgccggccgccgcccg
gtctctctgtttcgctgcccgtcgggtatcgatggcgagagctttttccagaaacacgca
ggcaagggctttcccgacgaactcgcccgcatcgacatcgaggagaaggacggcgacacc
ggcgaatatctctatgcgaaggatgtgacgggctttgtcgccgcagcccagatgggcacg
atcgagtttcacggctggggcgcgcgcgccgacaggatcgaagcgcccgaccggctgatc
ttcgacctcgacccggatgagggccttggctttactgagacgaagaaggccgccttcgag
atgcgcgaagcgctttccgacatcggcctcaaatcgaccgccatggtcaccggcggcaag
ggcatccacgtcatcgtgccgttgaaacggacggtgagctgggacacggtcaaggccttc
gccaggaccttcgcccatatgatggccgaagaagaccccgaacgctacatcgccaccatg
tcgaaggaaaagcgcaagaaccgcatcttcatcgactggctccgcaacgaacgcggcgcc
accgccatcctcccctattccctccgcgcccgcccgaacgcctccgtggcaacccccgtg
acctgggaggaactgaacgacctgaaaagcgccgcgacgttcacgatcggcgatatggca
gggcggctgaagggcagggacccggcgctggcggtgaagccgcagacgctggggaaggcg
gtgattggaaggctggagaagcgggtggggtga

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