Martelella mediterranea: Mame_02200
Entry
Mame_02200 CDS
T04757
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmed
Martelella mediterranea
Pathway
mmed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mame_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmed03400
]
Mame_02200
Enzymes [BR:
mmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mame_02200
DNA repair and recombination proteins [BR:
mmed03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mame_02200
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Other DBs
NCBI-ProteinID:
AQZ51535
UniProt:
A0A1U9Z1F8
LinkDB
Position
2364681..2367173
AA seq
830 aa
MAAPDTLAEYETRRDFEKTKEPKRGRARKSRSGDLKFVVQKHDARRLHFDFRLEWDGVLL
SWAVTRGPSDDPGEKRLAVRTEDHPLDYADFEGTIPKGQYGGGTVMVWDTGSWEPLHDPD
EGLKQGKLHFRLKGERMQGGWALVRMRGRRGEKRENWLLIKERDDKAGEEPDRLTEDFED
SVTTGRSFSEIEAGHDVWKRRTKKPTDKQEPQKKKPRVKAKFPAFRKPQLATLYDEAPDG
EDWIHETKFDGYRCIAALSNGEARFYTRSGKDWTEKYGDLAEAFAPLEGESLLIDGEIMA
ASVPKDGSAFSALQAALQDGAPLIFYVFDILERDGKSLTDLPLSERKQALEEALSPLDTE
KGPIRLSTWVEGDGRDILAKICKAGGEGIVSKRADARYRHTRTSAWRKIKCSRRQEFVIG
GYSPSTKKGRPFASLLIGQYDDDGVFCYRGRVGTGFDEKTLDDLGDRLKRLARKTAPFAE
VPRAIARDARWVTPKLAAEIDFAEFTADGHVRHGAFLGLREDKEAGAVQAEKAKGDKVAG
IEITHPDRQLYGKAGVTKADVARHYAAVGSRMLEIAGRRPVSLFRCPSGIDGESFFQKHA
GKGFPDELARIDIEEKDGDTGEYLYAKDVTGFVAAAQMGTIEFHGWGARADRIEAPDRLI
FDLDPDEGLGFTETKKAAFEMREALSDIGLKSTAMVTGGKGIHVIVPLKRTVSWDTVKAF
ARTFAHMMAEEDPERYIATMSKEKRKNRIFIDWLRNERGATAILPYSLRARPNASVATPV
TWEELNDLKSAATFTIGDMAGRLKGRDPALAVKPQTLGKAVIGRLEKRVG
NT seq
2493 nt
+upstream
nt +downstream
nt
atggccgcccccgacacgcttgccgaatacgaaacccgtcgcgactttgaaaagacgaag
gagcccaagcgcggccgcgcccgcaagagccgctccggcgacctcaaattcgtggtgcag
aagcacgacgcccgccggctgcatttcgatttccggctggagtgggacggcgtgctttta
agctgggcggtcacccggggcccgagcgacgaccccggcgaaaagcggctggcggtgcgc
accgaggaccatccactcgactatgccgatttcgagggcaccattcccaaggggcaatat
ggcggtggcacggtgatggtgtgggacaccggaagctgggagccgctgcatgaccctgat
gaggggctgaagcagggcaagctgcatttccgcctgaagggcgagcgcatgcagggcggc
tgggcgctggtgaggatgcgcggccggcgcggcgagaagcgcgagaactggctgctgatc
aaggagcgcgacgacaaggccggtgaggagcccgaccggctgacggaggacttcgaggac
agcgtcaccaccggccgctccttcagcgagatcgaagccggccacgatgtgtggaaacgc
cgcacgaaaaagcccactgacaagcaggaaccgcagaagaaaaagccgcgcgtaaaggcg
aaattccccgccttccgcaaaccccagctcgccacgctctatgatgaagcgcccgacggc
gaggactggatccacgaaaccaagtttgacggctaccgctgcatcgccgccctcagcaat
ggcgaggcgcggttctacacccgctccggcaaggactggacggagaaatatggcgatctg
gccgaggccttcgcgccgcttgagggcgaaagcctgctgattgacggcgagatcatggcg
gcctcggtgccgaaggatggctccgccttttccgccctgcaggcagcgcttcaggatggc
gcgccgctgattttctacgtcttcgacattctggagcgcgacggcaaatcgctgaccgac
ctgccgctgagcgagcgcaaacaggcgctggaggaggcgctgtcgccgctcgataccgaa
aaggggccgatccggctttccacttgggtcgagggcgatggccgggatatcctggcaaaa
atctgcaaggccggcggcgaggggatcgtgtcgaagcgggcggatgcgcgctatcgccac
acccgcaccagcgcgtggcgcaagataaaatgctcgcgccggcaggaattcgtgatcggc
ggctattcgccgtctacgaagaaaggccggccctttgcctcgctcctcatcggccagtat
gatgatgacggcgtgttctgctatcgcggccgcgtcggcacggggtttgacgagaaaacg
ctggatgatctcggcgaccggctgaagcgccttgcccgcaagaccgcgccttttgccgag
gtgccgcgcgcgattgcccgcgatgcgcgctgggtgacgccgaagcttgcggcggagatc
gatttcgccgagttcaccgccgatggccatgtccgccacggcgcgtttctgggcttgaga
gaggacaaggaggctggcgcggtgcaggcggagaaagcgaagggcgacaaagtcgccggc
atcgaaatcacccatccggaccgccagctttacggcaaggccggcgtcaccaaggccgat
gtcgcgcgccattacgcggcggtcggcagccgcatgctggagatcgccggccgccgcccg
gtctctctgtttcgctgcccgtcgggtatcgatggcgagagctttttccagaaacacgca
ggcaagggctttcccgacgaactcgcccgcatcgacatcgaggagaaggacggcgacacc
ggcgaatatctctatgcgaaggatgtgacgggctttgtcgccgcagcccagatgggcacg
atcgagtttcacggctggggcgcgcgcgccgacaggatcgaagcgcccgaccggctgatc
ttcgacctcgacccggatgagggccttggctttactgagacgaagaaggccgccttcgag
atgcgcgaagcgctttccgacatcggcctcaaatcgaccgccatggtcaccggcggcaag
ggcatccacgtcatcgtgccgttgaaacggacggtgagctgggacacggtcaaggccttc
gccaggaccttcgcccatatgatggccgaagaagaccccgaacgctacatcgccaccatg
tcgaaggaaaagcgcaagaaccgcatcttcatcgactggctccgcaacgaacgcggcgcc
accgccatcctcccctattccctccgcgcccgcccgaacgcctccgtggcaacccccgtg
acctgggaggaactgaacgacctgaaaagcgccgcgacgttcacgatcggcgatatggca
gggcggctgaagggcagggacccggcgctggcggtgaagccgcagacgctggggaaggcg
gtgattggaaggctggagaagcgggtggggtga
DBGET
integrated database retrieval system
