KEGG   Mycobacterium marinum M: MMAR_1623Help
Entry
MMAR_1623         CDS       T00694                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase LigB
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mmi  Mycobacterium marinum M
Pathway
mmi03030  DNA replication
mmi03410  Base excision repair
mmi03420  Nucleotide excision repair
mmi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MMAR_1623 (ligB)
   03410 Base excision repair
    MMAR_1623 (ligB)
   03420 Nucleotide excision repair
    MMAR_1623 (ligB)
   03430 Mismatch repair
    MMAR_1623 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmi03032]
    MMAR_1623 (ligB)
   03400 DNA repair and recombination proteins [BR:mmi03400]
    MMAR_1623 (ligB)
Enzymes [BR:mmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MMAR_1623 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MMAR_1623 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MMAR_1623 (ligB)
DNA replication proteins [BR:mmi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MMAR_1623 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MMAR_1623 (ligB)
DNA repair and recombination proteins [BR:mmi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MMAR_1623 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     MMAR_1623 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     MMAR_1623 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACC40073
UniProt: B2HHE1
LinkDB All DBs
Position
complement(1960866..1962371)
Genome map
AA seq 501 aa AA seqDB search
MGGTSSRLAKVERIAELLRAAAPDPELVAIVVAWLSGELRQRQIGVGWAALRSLPAAAGS
PALTVTGTDAAFSEIGAVSGKGSAARRRELITRLFAAATETEQAFLVRLLSGELRQGALA
GIMVDAVARAAEVPATAVQRAAMLGGDLPTVAAACLAAGSSGAAGALDSFTLRVGRPIGP
MLAQSAGSITVALERHGGATIFEAKLDGARVQIHRTGDEVTVYTRSLDDVTARLPEVVQA
TLALPVSDLVADGEAIALQPDGRPHRFQVTASRFGRSVNVAAAQAKQPLSVFFFDILHRD
GRDLLDAPTTDRLAALDAVVPARHRVDRLTTADAAAATDFLRATLAAGHEGVMAKSPTAP
YLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDAATGEFVMLGKTFK
GMTDAMLDWQTARFTELAVGGTDGYVVALRPEQVVEVAFDGVQASSRYPGGLALRFARVV
RYRDDKGPADADTIDTVRALY
NT seq 1506 nt NT seq  +upstreamnt  +downstreamnt
gtgggcggcacctcgtctcggctggccaaggtcgaacggattgccgagctgttacgcgcc
gccgcacccgacccggagctggtcgcgatcgtcgtggcgtggctctccggcgagctgcgg
cagcgccagatcggcgtgggctgggccgcgttgcggtcgctgcccgcggccgcgggtagc
ccggcgctcaccgtcaccggtaccgacgcggcgttcagcgagatcggcgcggtgtcgggt
aaggggtctgcggcccgccgccgcgaactcatcacgcggttgttcgccgctgcgaccgaa
accgagcaggcctttctggtgcggctgctcagcggcgaactgcgccagggcgcgctggcc
gggatcatggtcgacgccgtcgccagggcggccgaagtccccgctacggcggtgcaacga
gccgccatgctgggcggggatttaccgacggtggcggcggcgtgcctggcggccgggtca
tcgggcgcggccggcgcgctggattcgttcacgctgcgggtgggcagaccgatcgggcca
atgctggcgcagagcgccggcagcatcaccgttgccctcgaacgccatggcggtgcaaca
attttcgaggcaaagttggatggcgcccgggttcagatccaccgaaccggtgatgaggtc
accgtctatacccgaagcctcgacgacgtcacggcccgcctgccggaggtggttcaggca
acgctggcgctgccggtcagcgaccttgttgccgacggcgaggcgattgccctgcaacca
gacggccggccgcatcgcttccaggtcaccgcatcacgatttggccggtcggtgaatgtc
gctgccgcccaagccaaacagccgctgtcggtgttcttcttcgacatcttgcatcgggat
ggacgcgacctactcgatgcgccgaccaccgaccggctggcagccctggacgccgtggtg
ccggcccggcaccgagtcgatcggctgaccaccgcagacgcggccgcggcgaccgatttt
ctgcgggcaacactggccgccggccacgaaggcgtgatggccaaatcccccaccgcgccc
tacctggccggccgccgcggcgccggatggctgaaggtcaaaccggtgcacacgctggac
ctggtggtgctcgcggtggagtgggggtcaggaagacgacgcggcaagctgtccaatatt
cacctcggcgcccgcgatgccgccaccggcgaattcgtgatgctgggcaagacgttcaaa
ggcatgaccgatgccatgctggactggcagaccgcgcgattcaccgaacttgccgtgggg
ggcaccgacggctatgtggtcgcgctgcgccccgagcaggtggtcgaggtggccttcgac
ggcgtgcaggcgtcctcgcgttatcccggcgggctggcgttgcgcttcgcccgggtggtg
cgctaccgcgacgacaaggggccggccgacgcagacaccatcgacaccgtgcgggcgctg
tattga

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