Mycolicibacter minnesotensis: MMIN_25050
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Entry
MMIN_25050 CDS
T06638
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmin
Mycolicibacter minnesotensis
Pathway
mmin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMIN_25050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmin03400
]
MMIN_25050 (ligD)
Enzymes [BR:
mmin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMIN_25050 (ligD)
DNA repair and recombination proteins [BR:
mmin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMIN_25050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBY34444
UniProt:
A0A7I7R711
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All DBs
Position
2669954..2672236
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AA seq
760 aa
AA seq
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MTAESAQTRVTLTNADKVLYPATGTTKAEVFGYYTRIAEVMLPHIAGRPATRKRWPNGVE
QGSFFEKQVASSAPDWLPRADIQHRSGVTTYPIIEDLDGLAWIAQQAALEVHVPQWRFEE
QWSHGGKVLAPGLATRLVFDLDPGEGVSMSQLAEVARAIRDVISDLGLQTFPLTSGSKGL
HIYAALERPVSSSGAASVAKRVAQQLESALPMLVTATMSKKLRVGKVFLDWSQNNASKTT
IAPYSLRGREQPTVAAPRTWAEIDDAELRQLRFDEVLDRAARNGDLLAGLDPPPQAPDRL
AVYRAKRAADRTPEPVPAAAPAPSAGNSFVIHEHHARRLHYDFRLERDGVLMSWAVPKNL
PATTSVNHLAVRTEDHPLEYGSFEGTIPKGEYGAGTVRIWDSGTCVTEKFEDTAEKGEVI
VVLSGHRISGRYALIRTGGNQWLAHRMKDQQAFSFAELTPMLATHGSVARLTPSQWAFEG
KWDGYRLLVEADHGRLRLRARSGRDVTGEYRHLPFPATDLAEHHLVLDGELVALDDAGVP
SFAAMQNSARAARLQFWAFDLLYLDGRPLLRVAYRDRRKLLETLAQGTDLVVQDLLYPDG
AKALEQSLSLGWEGVVAKKWDSAYQPGRRSSVWIKSKHWRTQEVVIGGWRAGEGARGGGI
GSLLMGVPDAGGLRFVGRVGTGFTERQLAALKELLLPQLADESPFNAELSTADVKDVTFV
KPTLVGEVRYSERTSDGRLRQPSWRGLRPEKTPGDVVSED
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctgagtccgcgcagacccgggtcacgctgaccaacgccgacaaggtgctctac
cccgccacgggcaccaccaaagccgaggtcttcggctactacacccgtatcgccgaggtg
atgctgccgcacatcgcggggcgcccggcgacacgcaaacgctggcccaacggggtcgaa
cagggctccttcttcgaaaagcaggtggcctcctcggcgccggactggctgcctcgcgcc
gacattcagcatcgctccggcgtcaccacctatccgatcatcgaggacctcgacggcctg
gcctggatcgcccagcaggccgcgctggaagtccacgtcccgcagtggcgattcgaggag
caatggagccacggcggcaaggtgctcgcacccgggctggcaacgcgtctggtgttcgac
ctcgatcccggcgagggcgtgtcgatgagtcagctcgccgaagtggcgcgtgccattcgt
gacgtgatctccgatctgggcctgcagacctttccgctcaccagcggtagtaagggactg
cacatctacgcggcgctggagcgtccggtcagcagttccggcgccgcgtcggtggccaaa
cgtgttgcccagcaactcgaaagcgccctgccgatgctggtgacggcgaccatgtcgaag
aagctgcgggtggggaaggtctttctcgactggagccagaacaacgcgtcgaaaaccacc
atcgcaccgtattcgctgcggggccgcgagcagcccaccgttgccgctccacgcacctgg
gccgagattgacgatgcggaactgcggcagctgcgcttcgacgaagtgctcgaccgtgcc
gcccgtaacggcgacctgttggccggcctagacccgccgccgcaggcacccgaccggttg
gccgtataccgggccaaacgtgccgccgatcggactcccgaacccgttccggccgcggcc
ccggcgcccagcgccggcaacagctttgtcatccacgaacaccacgcccgccggttgcac
tacgacttccggctggagcgtgacggagtgctgatgagctgggcggtacccaagaacctt
ccggccacgacgtcggtcaaccatcttgcggtgcgtaccgaagaccatccgctggaatac
ggcagcttcgaaggcaccatccccaagggcgaatacggtgccggcaccgtacgcatctgg
gattcgggcacctgtgtgaccgagaagttcgaggacaccgccgaaaaaggcgaggtgata
gtcgttctgtccggacaccggatctccgggcgatacgcgctcatccgcaccggaggaaac
cagtggctggcgcaccgcatgaaagaccaacaggcgttctcgttcgcagagctgacgccg
atgctggcaacgcacgggtcggtggcccggctgacgccgagccagtgggcctttgaaggc
aaatgggacgggtatcgcctgctggtggaggccgatcacggccggctgcggttgcgggcc
cgcagcggccgggacgtcaccggtgagtatcgacacctaccatttcccgccacggacctg
gccgagcatcacctcgtgctcgacggcgagctggtcgcactcgacgacgccggagtgccc
agcttcgccgcgatgcagaacagtgcccgggcggcccggctgcagttctgggccttcgac
ctgctctatcttgacggccgtccgctgctgcgggtggcctaccgggatcgtcggaagctc
ttggaaacccttgcgcagggaaccgatctggtggtccaggatctgctttaccccgacggg
gcgaaggcactggagcagtcactcagcctcggctgggagggtgtggtcgccaagaaatgg
gactcggcctaccagccggggcgccggtcctcggtgtggatcaagtccaagcactggcgg
actcaggaggtcgtgatcggcggctggcgcgccggggagggcgccaggggcggtgggatc
gggtcactgttgatgggtgtccccgacgccggcggcctgcgctttgtcggtcgggtcgga
acggggttcaccgagcgtcaactagcggccctcaaggaactgttgctgcctcagctggcc
gacgaatcaccttttaacgcagagctttccaccgctgatgtgaaggatgtcacgttcgtg
aagccgacgctggtgggggaggtgcgctatagcgaacgcacctccgatggccggctgcgc
cagcccagctggcgcggcctgcggcccgagaagacgcctggcgatgtggtgagtgaggat
tga
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