Janthinobacterium sp. Marseille: mma_0003
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Entry
mma_0003 CDS
T00561
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
mms
Janthinobacterium sp. Marseille
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mms03032
]
mma_0003 (gyrB)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_0003 (gyrB)
Enzymes [BR:
mms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
mma_0003 (gyrB)
DNA replication proteins [BR:
mms03032
]
Prokaryotic type
DNA Topoisomerases
mma_0003 (gyrB)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
mma_0003 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ABR88535
UniProt:
A6STW4
LinkDB
All DBs
Position
3246..5744
Genome browser
AA seq
832 aa
AA seq
DB search
MSAIPNDNAPQPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSI
DESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKF
DQNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVS
PIKVVGDTDKRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKE
EDFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYNEQVLC
FTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVP
EPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKA
RDLTRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRG
KVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRT
LLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALIP
SEGAQPIAGDALAELVRQYNMANAIINRLTRAVDGAALTAIMTGVTLDLSSVEAAQASAQ
RLEQGINEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFVTGPDYTVLAAAAAT
FKGLIGPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLWE
TTMDPAVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgatccctaacgacaacgccccacagccgcaatccgctcaatacggtgcgtcc
tccatccagatcctcgaagggctggaagcagtgcgcaagcgcccaggtatgtacattggt
gatacgtcggacggtaccggtctgcaccactgcgtgtttgaagtgctggataactccatc
gatgaatcgctggccggtcactgcaccgagatccacgtcaccatccattccgacaactcc
atctccatcaccgataacggtcgcggcatcccgaccggcatcaaatgggatgacaagcac
gagccgaaacgcagcgcggcggaaatcgtcatgaccgaattgcacgcaggcggcaaattc
gatcaaaactcatacaaagtctccggcggtttgcacggtgtgggcgtgtcttgcgtcaac
ggtttgtcgaaactgctgaagctcaccatccgtcgcgatggcaaaaagcatgaaatggaa
ttcgtgcgcggcgtaccgcaaaaccgtgaagtcgaaaccatcgacggcatggtcgtatcc
ccaatcaaagtcgtaggcgataccgacaagcgcggtaccgaagtgcacttctgggcggat
gaagaaatcttcaccaacgtcgaattccactacgacatcctggccaagcgcatccgcgaa
ctgtccttcctcaataacggcgtgcacatcaagctcagcgaccagcgcaccggcaaggaa
gaagacttcgcgttcgaaggcggcacccgcggttttgttgaatacatcaacaaagccaag
agcgtgctgcacccgaccattttccaggcaactggcgagcgtttgtcggaccagggcacc
aacatcacggtcgacgtttcgatgcaatggaacgacgcctacaacgaacaggtactttgc
ttcaccaacaacatcccgcaacgtgacggtggtacccacctgaccggtttgcgcgcggcg
atgacacgtgtcatcaacaaatacatcgacgaacacgaattcgcgaaaaaagccaaagtg
gaaatcagcggcgacgacatgcgcgagggtttgacctgcgtattgtcggtcaaagtgcct
gaacctaaattcagctcgcaaaccaaagacaaactggtatcgagcgaagtgcgcggcccg
gttgaagaaatcgtcgcgaagacactggctgattacctgcaagaaaaaccaaacgacgcc
aaaatcatttgcggcaaaatcgttgaagccgcgcgtgcgcgtgaagcagcgcgtaaggca
cgagacctcacccgtcgtaaaggcgtgatggatggcctcggcctctccgccaagctggcc
gactgccaggaaaaagatccggcgctgtgcgaactctacgtagtcgaaggtgactccgcg
ggcggctcggcgaagcaaggtcgcgaccgtaaattccaggccatcctgccactgcgcggt
aaagtcctcaacgtggaaaaagcccgctttgaaaaaatgctggccagcgaacagatcacc
accttgatcgcaacgctgggtaccagcatcggcgcggatgaattcaatatcgaaaaactg
cgctaccaccgcatcatcatcatgaccgatgcggacgtcgacggcgcccacatccgcacc
ctgctgctcaccctgctgtatcgccagatgccgcaactggtagagcgcggccacgtctac
atcgcgcaaccgccgctgtacaaggttaagcacggcaaggacgaacgttatctgaaagat
gacgtggaagaagccgtctacatgatgcaaatcgcattgaacgatgcagcgttgatccca
agcgaaggcgcacagcctatcgccggcgacgcactggctgaactggttcgccagtacaac
atggctaacgccatcatcaaccgcctgacccgtgcagtagacggcgccgccctcaccgcc
atcatgaccggcgtcacgctggacctgagctcggtcgaagccgcacaagcatctgcccag
agactggagcaaggcatcaacgaaccagcggtgacggtcacggtgaaatcggatgaactg
tccggcaaacacaccctgcgcatcaaccgcatgtaccacggcaacgtcaaagccagcagc
atagacagcgattttgtcaccggtcctgactacacggtactggcagcagcggcagcaacc
ttcaaaggcctcattggcccaggcgcattggtacaacgtggtgccggtgaaaaagccaaa
gtatcggccatcagcgacttccatcaagcgatgaactggctgcgcagcgaagcagaacgt
aacgtcggtaaacagcgctacaaaggtctgggtgaaatgaacccggaacaactgtgggaa
acaacgatggaccctgctgtacgccgcttgttaaaagtgcagatcgaagacgcgattgct
gcggatcagatctttactaccttgatgggtgatgatgttgagccgcgtcgggcgtttatt
gagttgaatgcgctttcggcggggaatattgatatttga
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