Janthinobacterium sp. Marseille: mma_0534
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Entry
mma_0534 CDS
T00561
Symbol
dnaE1
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03030
DNA replication
mms03430
Mismatch repair
mms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
mma_0534 (dnaE1)
03430 Mismatch repair
mma_0534 (dnaE1)
03440 Homologous recombination
mma_0534 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mms03032
]
mma_0534 (dnaE1)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_0534 (dnaE1)
Enzymes [BR:
mms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
mma_0534 (dnaE1)
DNA replication proteins [BR:
mms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
mma_0534 (dnaE1)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
mma_0534 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
GHMP_kinases_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABR89120
UniProt:
A6SVC7
LinkDB
All DBs
Position
605048..608506
Genome browser
AA seq
1152 aa
AA seq
DB search
MISPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSN
GIKPIVGCDVWISNDNDRDKPSRLLLLVKNKDGYLQLCELLSKAWLTNLHRGRAEIRPEW
LEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYIEVQRAGQP
NMDGHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANPRRIKRFNE
QQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSSIDEFLVKE
AQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLIVADFIKWAKNNG
VPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRVI
QYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPFKPGKLVTISD
AIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGG
DAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFALEKLPLNDRP
SYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHG
ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAEH
RELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFM
AANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVPGKKATQIRYGLGA
VKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRAGAFDCFDVDRAIL
LASVAFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVSPWSDKQKLTEEKAALGFYL
SGHLFNAYADEARRFARAKLSSLEPSREPRTIAGVISGLRTQMTQRGRITIVTLDDGSAT
VDVTVYNELYDANRHMFKEDEFLAVTGKVSEDRFSGGLRITAEKVMDIAGVRIQYANCVR
LSLPASTDINVLKATLQPAARADGSPVVIQYQNPKGVSELCFAEQWRINPDDNIKQKLID
LYSDKNVQIAYD
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgatttctccgcaatttatccatcttcgtctccattccgaatattcgatcgttgatggc
ctgatccgcatcgatgatgtgatccaggccgctgccgccgatatgcagccggcgctcgcg
atttccgacctggccaatctgttcggcatggtcaaattctataaagaagcccgttccaac
ggtatcaagcccatcgtcggctgtgatgtctggatcagtaatgacaatgaccgcgacaag
ccgtcgcgcctgttgctattggtcaagaacaaggacggttacctgcagctgtgtgaattg
ctgtcgaaagcctggctgaccaatttgcaccgcggtcgtgccgaaattcgccccgagtgg
ctggagcaggtggcggcggatggcaagaatggtttgatcgtcttgtccggcgcgcatttt
ggtgatgtcgggatcgccatcgataacggtaacctgggtgcagccgagcgttgtgcgcag
cgctgggcggaattattccccggtcatttttatatcgaggtacagcgtgccggccagccg
aatatggacggtcatgtgcgccaggcttcggtgctggccgccaagctgggcttgcccctg
gttgcgacccatccggtgcaattcctcggcctggaagaattcactgcgcatgaagcgcgc
acctgtatttccgaaggcgaaatcctcgcgaacccgcgccgcatcaaacgctttaatgag
cagcaacgcttcaagacgcaggcggaaatggcggaactcttcgccgatatgccgaacgcc
ctgcaaaactcggtcgaaattgccaagcgctgcaacctggtgctggaactcggcaaaccc
aagctgccgaacttcccgacaccggacggttcatcgattgatgaattcctggtcaaggaa
gcgcagcgcgggctggatcagcgcatggagcatttgtatcctgatcctgccgcacgtgaa
aagcaccgggaacgttatcaggcgcggctgaagttcgagaccgacaccattatcaaaatg
ggtttccccggttacttcctgatcgtggcggactttatcaaatgggcgaagaataacggc
gtgccggttggaccgggccggggttctggtgccggttcgctggttgcgtattcattgctg
attaccgatctggatccgctgcaatacaacctgctgttcgaacgcttcctgaatccagaa
cgggtatccatgcccgatttcgatatcgacttttgccaggaagggcgcgatcgcgtcatc
cagtacgtgaaggatcagtacggcaaggatgcggtatcgcagattgcaaccttcggtacc
atggccgccaaaggtgcggtgcgtgacgttggtcgtgtgctggattttggttataacttt
tgcgatggcatctccaagctgattccattcaagccgggcaagctggtcacgatttccgat
gcgatcaaggaagaaccgctgctggccgagcgcctggaaaatgaagaagaggtcaagcaa
ttgctggacctggcgcaacaggtggaaggtatcgcccgtaacatcggtatgcatgccggt
ggcgtgttgattgcaccgggcaagctgaccgatttctgtccgctctacacgcagggtggt
gatgccggcgtggtctcgcaatacgataaggatgacgtcgaggcggtcggcctggtgaag
ttcgacttcttgggtttgaccacgctgactattctcgatcgtgcggtgcgttacatcaag
gacctcgatccggcgatggcggattttgcgctggaaaagctgccgctcaatgaccggcct
tcatacgaattactgaccaaggcgaaaaccgtcgctgtcttccagctggaaagccgcggc
atgcaaggcatgctcaaggatgcacggccggatcgttttgaagacattattgcgctggtg
gctttgtaccgtccgggcccgatggacctgatcccggatttttgccgacgcaagcacggt
gaacgtttcgaataccctgatcctcgtaccgaatccatcctgtccgaaacctacggcatc
atggtgtatcaggaacaggttatgcagatggcgcaggtcatcggcggttactcgctgggc
ggcgctgacttgctgcgccgtgcgatgggtaagaaaaaagccgaagagatggcggaacat
cgtgaattgttccgcgccggcgcatcgaaaaatgatttgtccgctgaaaaagccgatgaa
attttcgatttgatggaaaaatttgccggctacggtttcaataaatcgcatgccgctgcc
tacgccttgctgtcgtatcacaccgcctacctgaaggcgcatcaccccgccgcgttcatg
gcagccaacttgtcgctggcgatggatgataccgacaagatcaagatcctggtcgaagat
gcgattgatatatgcggcttgagcttgctgccgccggatatcaatcaatccgattatcgt
ttcacgccggtcggcgtgccgggcaagaaggcaacgcagatacgttatggtttgggcgcg
gtcaaaggttccggcaagggtgccattgatgccgtgatcgaagcgcgcaaggaacggcct
ttcactgatttgttcgacttcgccaagcgggtcgacaaacgccagatcaatcgccgtacg
atagattcgctgatccgtgccggtgccttcgattgcttcgatgttgatcgcgccatcctg
ctggcatcggttgctttcgcaatggaatgcgcggagcaggcggaagccgccgccaaccag
gtcagcctctttggcggtgatgacagcgacctggaaacgccaccggaatacgtaaaagta
tcgccatggagcgataagcaaaagctgacggaagaaaaagctgcactcggtttctacctg
tccggccacttgttcaatgcctatgcggacgaggcacgtcgctttgcccgtgccaagctg
agtagcctggagccgtcacgcgagccgcgcacgattgccggtgtgatctccggtttgcgt
acacaaatgacgcagcgtggccgtattacgattgtgactttggatgatggcagtgccacg
gtggatgtgacggtctataacgagttgtatgatgccaaccgtcatatgtttaaggaagat
gaattccttgcggtaaccgggaaggtatcggaagaccgcttctccggcggcttgcggatt
accgcagaaaaggtgatggatattgccggagtgcgtatccagtatgccaattgcgtacgc
ttgtcattgccggcttcgaccgatatcaatgtgctgaaggcgacgctgcaaccggcggct
cgcgcagacggtagtccggtcgtgatccagtatcagaatcccaagggcgtatcggaattg
tgctttgccgagcaatggcgtatcaatccggacgacaacataaaacaaaaactaatcgat
ttatattcggacaaaaatgtacagatcgcctatgactga
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