KEGG   Mus musculus (mouse): 19401Help
Entry
19401             CDS       T01002                                 

Gene name
Rara, Nr1b1, RAR, RARalpha1
Definition
(RefSeq) retinoic acid receptor, alpha
  KO
K08527  retinoic acid receptor alpha
Organism
mmu  Mus musculus (mouse)
Pathway
mmu04659  Th17 cell differentiation
mmu04915  Estrogen signaling pathway
mmu05200  Pathways in cancer
mmu05202  Transcriptional misregulation in cancer
mmu05221  Acute myeloid leukemia
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    19401 (Rara)
  09152 Endocrine system
   04915 Estrogen signaling pathway
    19401 (Rara)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    19401 (Rara)
   05202 Transcriptional misregulation in cancer
    19401 (Rara)
  09162 Cancer: specific types
   05221 Acute myeloid leukemia
    19401 (Rara)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    19401 (Rara)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:mmu03310]
    19401 (Rara)
Transcription factors [BR:mmu03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone-like
    19401 (Rara)
Nuclear receptors [BR:mmu03310]
 1. Thyroid hormone like
  1B. Retinoic acid receptor (RAR)
   19401 (Rara)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: zf-C4 Hormone_recep
Motif
Other DBs
NCBI-GeneID: 19401
NCBI-ProteinID: NP_001170773
MGI: 97856
Ensembl: ENSMUSG00000037992
Vega: OTTMUSG00000006440
UniProt: P11416 Q3U3R3
LinkDB All DBs
Position
11 D; 11 62.76 cM
AA seq 462 aa AA seqDB search
MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSLQHQLPVSGYSTPSPAT
IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM
VYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDRNKKKKEAPKPECSESYTL
TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV
EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA
GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALK
VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL
DTLSGQSGGGTRDGGGLAPPPGSCSPSLSPSSHRSSPATQSP
NT seq 1389 nt NT seq  +upstreamnt  +downstreamnt
atggccagcaatagcagttcctgcccaacacctgggggcgggcacctcaatgggtaccca
gtacccccctacgccttcttctttccccctatgctgggtggactctccccacccggcgct
ctcaccagcctccagcaccagcttccagtcagtggttacagcacaccgtccccagccacc
atcgagacccagagcagcagttccgaagagatagtacccagccctccctcaccaccgccc
ctgccccgcatctacaagccttgctttgtttgtcaagacaaatcatccggctaccactat
ggggtcagcgcctgtgagggctgtaagggcttcttccgacgaagcatccagaagaacatg
gtgtatacgtgtcaccgggacaagaactgcatcatcaacaaggtgacccggaaccgctgc
cagtactgccggctgcagaaatgtttcgacgtgggcatgtccaaggagtcggtgcgaaac
gatcgaaacaaaaagaagaaagaggcacccaagcccgagtgctcagagagctacacgctg
acgcctgaggtgggcgagctcattgagaaggttcgcaaagcgcaccaggagaccttcccg
gccctctgccagctgggcaagtacactacgaacaacagctcagaacaacgagtctccctg
gacattgacctctgggacaagttcagtgaactctccaccaagtgcatcattaagactgtg
gagttcgccaagcagcttcccggcttcaccaccctcaccatcgccgaccagatcaccctc
ctcaaggctgcctgcctggatatcctgattctgcgaatctgcacgcggtacacgcctgag
caagacacaatgaccttctcagatggactgaccctgaaccggactcagatgcacaacgct
ggctttggccccctcaccgacttggtctttgccttcgccaaccagctgctgcccctggag
atggacgatgctgagactggactgctcagtgccatctgcctcatctgtggagaccgacag
gacctggagcagccagacaaggtggacatgctgcaagagccgctgctggaagcactgaaa
gtctacgtccggaaacggaggcccagccgaccccacatgttccccaagatgctgatgaag
atcacagaccttcggagcatcagcgccaagggagctgaacgggtgatcacattgaagatg
gagatcccaggctccatgccaccgctgatccaggaaatgctggagaactctgagggcttg
gacactctaagcggacagtcggggggcggaacacgagatgggggtggcctggccccccct
ccgggtagctgtagccccagcctcagtcccagctcccacagaagcagcccagccacccaa
tccccatga

KEGG   Mus musculus (mouse): 235320Help
Entry
235320            CDS       T01002                                 

Gene name
Zbtb16, AI467657, PLZF, Zfp145, lu
Definition
(RefSeq) zinc finger and BTB domain containing 16
  KO
K10055  zinc finger and BTB domain-containing protein 16
Organism
mmu  Mus musculus (mouse)
Pathway
mmu05200  Pathways in cancer
mmu05202  Transcriptional misregulation in cancer
mmu05221  Acute myeloid leukemia
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    235320 (Zbtb16)
   05202 Transcriptional misregulation in cancer
    235320 (Zbtb16)
  09162 Cancer: specific types
   05221 Acute myeloid leukemia
    235320 (Zbtb16)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mmu04121]
    235320 (Zbtb16)
Ubiquitin system [BR:mmu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul3 complex
    Adoptor and target recognizing subunit (BTB)
     235320 (Zbtb16)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: zf-H2C2_2 zf-C2H2_4 zf-C2H2 BTB zf-met zf-C2H2_jaz zf-C2H2_6 zf-C2H2_2 zf_UBZ Endonuclease_7 zf-C2H2_11 zinc_ribbon_15 MIX
Motif
Other DBs
NCBI-GeneID: 235320
NCBI-ProteinID: NP_001028496
MGI: 103222
Ensembl: ENSMUSG00000066687
Vega: OTTMUSG00000063009
UniProt: Q3UQ17
LinkDB All DBs
Position
9 A5.3; 9 26.47 cM
AA seq 673 aa AA seqDB search
MDLTKMGMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE
ILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK
ILETIQASDDNDTEATMADGGGEEEEDRKARYLKNIFISKHSSEESGYASVAGQSLPGPM
VDQSPSVSTSFGLSAMSPTKAAVDSLMSIGQSLLQGTLQPPAGPEEPTLAGGGRHPGVAE
VKMEMMQVDEAPGQDSPGAAESSISGGMGDKLEERSKEGPGTPTRGSVITSARELHYGRE
ESGEQLSPPVEAGQGPPGRQEPLAPPVEKHLGIYSVLPNHKADAVLSMPSSVTSGLHVQP
ALAVSMDFSTYGGLLPQGFIQRELFSKLGELAVGMKAESRPLGEQCSVCGVELPDNEAVE
QHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKAFVCDQCGAQFSKEDALETHR
QTHTGTDMAVFCLLCGKRFQAQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSH
TGDHPYECEFCGSCFRDESTLKSHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEK
PFECKLCHQRSRDYSAMIKHLRTHNGASPYQCTICTEYCPSLSSMQKHMKGHKPEEIPPD
WRIEKTYLYLCYV
NT seq 2022 nt NT seq  +upstreamnt  +downstreamnt
atggatctgacaaagatggggatgatccagctgcagaaccctagccaccccacggggctg
ctgtgcaaggccaatcagatgcgactggctgggactttgtgcgatgtggtcatcatggtg
gacagccaggagttccatgcccaccggacggtgctagcctgcaccagcaagatgtttgag
atcctcttccaccgaaacagccagcactatactctagacttcctctcgccaaaaaccttc
cagcagatcctggagtacgcctacacggccacactgcaagccaaggcggaggacctggat
gacctgctgtatgcagctgagattttagagatcgaatacctggaggagcagtgcctgaag
atcctggagaccatccaggcatctgatgacaatgacacagaggccaccatggctgacggt
gggggcgaagaagaagaggaccgtaaggctcgatacctcaagaacatctttatctcgaag
cattccagcgaggagagtggctacgccagtgtggctggacagagcctccctgggcccatg
gtggaccagagcccctcagtctccacctctttcggtctctcagccatgagtcctaccaag
gcagccgtggacagcttgatgagtataggacagtcactcctgcaaggaactcttcagcca
cctgcagggcctgaggagcccacactggcagggggtgggcgacaccctggggtggctgag
gtgaagatggaaatgatgcaggtagatgaagcccctggccaggacagccctggggcagct
gagtctagcatctcaggagggatgggggacaagcttgaagagaggagcaaagaggggcct
gggaccccgactcgaggcagtgtcatcactagtgccagagagctgcattatgggagagag
gagagtggtgagcagctctcgcctcctgttgaagctggccagggaccccctgggcggcag
gagcccctggcacccccagtggagaagcatttgggtatctactcggtgctgcccaaccac
aaggccgatgctgtgttgagcatgccgtcttcagtgacgtccggtctccatgtgcaacct
gccctggcagtctccatggacttcagcacctacgggggtctgctgcctcagggcttcatc
cagagggagctgttcagcaagctgggggagctggctgtgggcatgaaggctgagagccgc
cctctgggggagcagtgcagcgtgtgtggggtcgagcttccggacaacgaggcagtggag
cagcacaggaaactgcacagtgggatgaaaacatacgggtgtgaactctgcggaaaacgg
ttcctggacagtttgcgactgagaatgcatttactggctcattcagcgggtgccaaagcc
tttgtgtgtgatcaatgcggtgcccagttctcaaaggaggatgccctggagacacacaga
cagacccatactggcacggacatggctgtcttctgtctgctgtgtgggaaacgctttcag
gcacaaagcgcactccagcagcacatggaggtccacgcaggcgtgcgcagctatatttgc
agtgagtgcaaccgcaccttccccagccacacggctctcaagcgccaccttcgctcacat
acaggtgaccacccatatgagtgtgagttctgcggcagctgcttccgggatgagagcaca
ctcaagagccacaagcgcatccacacaggggagaagccctatgagtgtaatggctgtggc
aagaagttcagcctcaagcaccagttggagacgcactacagggttcacacaggtgagaag
ccctttgagtgcaaactctgccaccagcgctcccgagactactcggccatgatcaagcac
ctgagaacacacaacggtgcctcgccataccagtgtaccatctgcacggaatactgcccc
agcctctcctccatgcagaaacacatgaagggccacaagccggaggagatcccacctgac
tggaggatagagaagacgtacctctacctgtgttatgtgtga

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