KEGG   Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_0544Help
Entry
MYCMA_0544        CDS       T02177                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmv  Mycobacteroides abscessus subsp. massiliense GO 06
Pathway
mmv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MYCMA_0544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmv03400]
    MYCMA_0544
Enzymes [BR:mmv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MYCMA_0544
DNA repair and recombination proteins [BR:mmv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MYCMA_0544
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AFN62709
LinkDB All DBs
Position
complement(3721849..3724101)
Genome map
AA seq 750 aa AA seqDB search
MLYPATDTSPATTKADVFGYYTAIAPFMLPHIAGRPVTRKRWPNGVDQPSFFEKDLASSA
PDWLPRRRIEHKSRYVSYPLIDTSVALAWIAQQAALEVHVPQWRFAGENPGPATRLVFDL
DPGEGVGMAQLAEVARAIRDVLADIGLKTFPVTSGSKGLHLYVPLAQPASSSGAVAVAKK
VAVQLEQAMPDLVTATMTRQLRAGKVFVDWSQNSGSKTTVAPYSLRGRAVPTVAAPRTWE
ELDDPGLRQLRYDEVLTRAQRDGDLLAGLDDVEIAEDRLSTYRSMRDPARTPEPVPAIKP
EAGQNNSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPLEPSVNHLAVHTEDHPLEYG
SFEGTIPKGEYGAGEVTIWDSGTYDTEKFIDPRDDSGADGGQKGEVIVTLHGKRITGRYA
LIRTSGKQWLAHRMKDQRPAGSMPVGLAPMLPTTGSVAGLTAEEWAFEGKWDGYRLILEC
DRGQLRALARSGRDVTAEFPALQRLAHELSDHRVVLDGEVVVPDQKGLPSFALLQNRTPG
ADIRFWAFDLLYLDGKSLLRTKYRDRRRLLEVLVTGAESMTVPRQLSGDGAAALAYSQDQ
GWEGVVAKRLDSPYVPGRTQSWIKAKNWSSQEVVIGGWRKGQGGRSSGIGALLMGIPVEG
GLRYAGRVGTGFTEKELSSLKERLEPLHRAESPFDVPLSTVEAKDVQFVEPVLVAEVRYG
DRTPGGILKHSSWRGLRTDKSVRDVELDLG
NT seq 2253 nt NT seq  +upstreamnt  +downstreamnt
gtgctgtacccggccacggataccagcccggccaccaccaaagcggatgtcttcggctac
tacaccgcgatcgcccccttcatgttgccgcatatcgcgggccggccggtcacccgcaag
cggtggcccaacggcgttgaccagccgtcgttcttcgagaaggacctggcttcttcggcg
cccgactggctgccgaggcgccgtatcgagcacaagtcccgctacgtcagctacccgctg
atcgacacctcggtcgccttggcgtggatcgcgcagcaggcggcgctcgaggtgcacgtg
ccacagtggcgattcgccggtgaaaatccaggtccggcaacccggttggtgttcgacctg
gatcctggcgagggggtcggcatggcccaactggcggaagtggccagggccatccgggat
gtgctcgccgatatcggcctgaagacctttccggtgaccagtggaagcaagggcttgcac
ctgtacgtgccgctggcgcaaccagccagctcgtccggtgcggtcgctgtggcgaagaag
gttgccgtccagttggagcaggcgatgcccgacttggtgacggcgacgatgacccgacag
ctacgcgcgggcaaggtcttcgtggattggagccagaacagcggttccaagacgacggtg
gcgccctactcattacgtggccgggcggtgccgaccgtcgccgcgccgcgcacgtgggaa
gaactggacgaccccggcctgcgtcagctgcgatacgacgaagtgctgacgcgggcccag
cgtgacggcgacctgctggccgggctcgatgatgtcgagatcgccgaggacaggctgtcc
acctatcgcagcatgcgcgatcccgcacgcacgcctgaaccggtaccggcgatcaaaccc
gaagctgggcaaaataattcatttgtcatccaggagcatcacgccaccgcgctgcactac
gacttccggctggagcgcgatggcgtgctggtgtcgtgggcggtgcccaagaacctgccc
ttggaaccgtcggtcaatcatcttgcggtgcacaccgaggatcatccgctggagtacggc
tccttcgaaggcaccatcccgaagggagagtatggggcgggcgaggtgacgatctgggac
tcgggcacttacgacaccgagaagttcatcgacccgcgcgacgattcaggagccgacggc
gggcaaaaaggtgaggtcatcgtcaccctccacggcaagcgaatcaccgggcggtacgcg
ctgattcgaaccagcggcaagcagtggctggcgcaccggatgaaggatcagcggcccgca
ggttcgatgcccgtcggtctcgcgccgatgttgccgaccaccgggtcggtggcgggtctg
accgccgaagaatgggcgttcgaaggcaaatgggacggctatcggctgatcctggaatgc
gatcgcggacagctcagggcattggcgcgcagcgggcgcgacgtcacggccgaattcccg
gcgttgcaacggcttgcgcatgaactgtccgatcaccgggtggtgctcgacggcgaggtg
gtggtgccggatcagaagggcctgcccagctttgcgctgctgcagaacaggacaccgggc
gccgacatcaggttctgggctttcgatctgctgtatctggacggaaaatcgttgttgcgt
accaagtatcgggaccgacgtcgactgcttgaggtgcttgttaccggcgccgaatcgatg
acagtcccgcggcagttgagcggcgacggtgccgcggcccttgcgtactcgcaggatcaa
ggctgggagggcgtggtggccaagaggctggattccccctacgttcccggccgaacacag
tcttggatcaaggcgaagaactggagtagtcaagaggtcgtcatcggcggctggcgcaag
gggcagggcggtcgcagcagcggaataggggccctgctcatgggaatacctgtcgagggt
ggtctgcgctatgcgggccgggtcggtaccggattcaccgagaaggaactgtcatcgctg
aaggagcgtctagagcccctgcaccgcgccgaatcgccctttgatgtgccgctgtccacc
gtcgaggccaaggacgtgcagttcgtcgagccggtgttggtggccgaagtccgatacggc
gaccgcaccccgggcggaattctgaagcactcaagttggcgcgggctgcgcaccgacaag
tcagttcgcgacgtcgagctcgatctcgggtag

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