KEGG   Microvirga ossetica: BB934_20130Help
Entry
BB934_20130       CDS       T05139                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
moc  Microvirga ossetica
Brite
KEGG Orthology (KO) [BR:moc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BB934_20130
Enzymes [BR:moc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB934_20130
DNA repair and recombination proteins [BR:moc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB934_20130
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N
Motif
Other DBs
NCBI-ProteinID: ANY80250
UniProt: A0A1B2EJU5
LinkDB All DBs
Position
complement(4275032..4276606)
Genome map
AA seq 524 aa AA seqDB search
MAKLAAYRAKRDFTKTSEPAGKASRRRGASFVVQKHDASRLHYDFRLELDGTLKSWAVAK
GPSLVKGEKRLAVQVEDHPLSYGDFEGTIPEGQYGGGTVLLWDRGTWEPEGDPHEGIEKG
RLTFRLDGEKLQGTWHLVRMAKRPRERQESWLLIKADDSYARTEDDPDILEEAPLSVKTG
RSIEEIGPAQPAKSPAKRKAPAKKAAATKSDKPAKRAAASAKPAKDDGAVDVAGVRLTHP
DRVLWEDQGLTKQELAEYYLDIAEWLLPHLANRPLTLIRCPGGAEKKCFVQRHSWAGMSD
FIHRTMIPDNSGEHEALSVTDIQGVVALVQSGVLEMHVWGATLSDLERPDRLVFDFDPGE
GVEWPRVIEGALALRARLEAMDLASFVKTTGGKGLHVVVPLKPKAEWKDALAFTRKIAEA
MAGDEPERYTTTSVKQVREGRIFIDYLRNNREASAVAPYSTRSRPGAPVATPVDWKELTP
DLKPNGYTIDNIGRRLASLKRDPWADMGKIDQVLPEIRASKKKR
NT seq 1575 nt NT seq  +upstreamnt  +downstreamnt
atggcaaagctcgcagcttatcgcgccaagcgcgacttcacgaaaacctcggagccggca
ggcaaggcctcccggcgccgcggcgcctccttcgtcgtgcagaagcacgatgcctctcgc
ctccactacgatttccgtcttgagctcgacggcaccctgaagagctgggcggtggccaag
ggcccgagcctggtcaaaggtgagaaacgcctcgccgttcaggtcgaggaccatcccctc
agctacggcgatttcgagggcaccattcccgaaggccagtatggcggcggtaccgttctg
ctgtgggaccgtggaacctgggagccggagggcgacccgcatgagggcatcgagaagggc
cgcctcaccttccgcctcgacggtgagaagctgcaaggcacctggcatctggtccgcatg
gccaagcgcccgcgtgagcgccaggaatcatggctcctgatcaaggccgacgattcctat
gcccgcacagaggacgatccggatatcctcgaggaggctcccttgtcggtaaagaccggc
cgttcgattgaggagatcggacctgctcagccagcgaagagccccgccaagcggaaagcc
ccagcgaagaaagcggccgcaacgaaatccgacaaacccgcgaagcgcgctgccgcttcc
gccaaacccgccaaggacgatggcgccgtcgacgtggccggcgtgaggctgacccatccg
gaccgggtactatgggaggaccagggcctcaccaagcaggagctggccgagtattatctg
gacatcgccgagtggcttctgccgcatctggcgaaccgccccctcacgctcatccgctgc
ccaggcggcgcagaaaagaaatgcttcgtccagcgtcattcctgggcaggcatgagcgat
ttcatccaccgtaccatgatcccggacaacagcggcgagcacgaggctctgtctgtcacc
gacatccagggcgtcgtcgccctcgtgcaatccggcgttctggagatgcatgtctggggc
gcgacgctgtccgatctggaacggcccgaccgcctcgtcttcgacttcgatccgggcgaa
ggcgtggaatggccgcgcgtgatcgaaggagcgcttgcgcttcgcgcccgcctggaagcc
atggatcttgcaagcttcgtcaagaccaccggcggcaagggacttcatgtggtcgtgccc
ctcaagccgaaggccgagtggaaggatgccctcgctttcacccgaaagatcgccgaagcg
atggccggcgacgagcccgagcgctacactacgacctcggtgaaacaggtacgggagggc
aggatcttcatcgactacctgcgcaacaaccgcgaggcttcggcggtggcaccctattcg
acccgatcccgcccaggcgctcccgtcgccacgcctgtggactggaaggaactgacgccc
gatctcaagcccaacggctacacaatcgacaatatcggcaggcgtcttgcctcgctcaag
cgggatccctgggccgatatgggcaagatcgatcaggttctgcctgagatccgagcctcg
aagaaaaagcggtaa

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