Methanobrevibacter olleyae: YLM1_0096
Help
Entry
YLM1_0096 CDS
T04385
Name
(GenBank) tRNA-splicing ligase RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mol
Methanobrevibacter olleyae
Brite
KEGG Orthology (KO) [BR:
mol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mol03016
]
YLM1_0096
Enzymes [BR:
mol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
YLM1_0096
Transfer RNA biogenesis [BR:
mol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
YLM1_0096
Prokaryotic type
tRNA splicing ligases
YLM1_0096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMK14656
UniProt:
A0A126QXT7
LinkDB
All DBs
Position
124451..125899
Genome browser
AA seq
482 aa
AA seq
DB search
MSIKESLEKVRDNVWELPSDYKKEMRVPGRLYLDDESIKDIEEGALEQVANVACMPGIQG
ASIAMPDIHFGYGFSIGGVGAFNYNNGVVSPGGVGFDINCGVRMLRTNLSEDEIKPKLKE
LTEVLFKNIPSGVGSKGQIRLKDNEINEVLDYGAWWAVERGFGWEEDLKFLEENGRMKEA
ESAIVSDKAKKRGIPQLGSLGSGNHFLEVQKIDEIYDENVAKAFGLEAGSIAIMIHSGSR
GCGHQICSDYLRKMDKAYRNYKINLPDRQLACAPIDSKEAQSYLKSMAAGANYAWANRQM
MSHWIRQSFEEVFSRDAEDMGMTTIYDVAHNIAKKEVHKVKGSHMEVLVHRKGATRAFGP
GRREIPKEYSSVGQPVLIPGTMGTASYILHGTDLAMEETFGSTAHGAGRVLSRTAAKKQF
TAEQIEKDLNAKGIHVKANSAPVLAEEAPDAYKNVDSVVKTSHDAGIAKLVAKVLPLAVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattaaagaaagtcttgaaaaagttagagataatgtatgggaactaccaagtgat
tataagaaggaaatgagggttcctggaagattgtatcttgatgatgaatctattaaagat
attgaagaaggggctcttgaacaagtggctaatgtagcttgtatgccaggtattcaaggt
gcatcaatagctatgccagatattcattttggatatggatttagtattggtggtgtggga
gcttttaattataataatggtgttgtaagtcctggaggagttggttttgatattaactgt
ggagttagaatgcttagaaccaacttaagtgaggatgaaatcaaacctaaacttaaggaa
cttactgaagttttatttaaaaatattccatcaggtgtaggaagtaaaggccaaataagg
cttaaggacaatgaaattaatgaagttttagactatggtgcttggtgggctgttgaacgt
ggattcggttgggaagaagaccttaaattcctagaagaaaatggtaggatgaaggaagct
gaatctgctattgttagtgacaaggctaaaaaaagaggaattccccaattaggttcatta
ggttctggaaaccacttcttagaagttcaaaaaattgatgaaatttatgatgaaaatgta
gctaaggcatttggccttgaagcgggatcaatagctattatgattcatagtggttcaagg
ggatgcggacaccagatctgttctgattatttgaggaaaatggataaggcctataggaat
tataagattaaccttccagataggcaattagcctgtgcacctattgactctaaggaagca
caaagctacttaaaatctatggctgccggagctaattatgcatgggcaaaccgtcaaatg
atgtctcattggatcagacaatcctttgaggaggtattctcccgtgatgctgaagatatg
ggaatgactacaatctatgatgttgcacacaatattgctaaaaaagaggttcataaagtt
aaaggctctcatatggaggttcttgttcacagaaaaggggctactcgtgcatttggccct
ggaagacgtgaaattcctaaggaatatagttctgtaggacaaccagttttaattcctgga
actatgggaacagcttcttatattttgcatggtactgaccttgctatggaggaaaccttt
ggttcaactgctcatggtgcaggaagggttttatctagaaccgctgctaaaaagcaattt
actgcagagcaaatagaaaaagatttaaatgcaaaaggaattcatgtaaaagcgaattct
gctcctgttttagctgaggaagcacctgatgcatataagaatgtggattctgttgttaaa
acctctcacgatgcaggtattgctaaattagtagcaaaagttcttcctttagcagttaca
aaaggctaa
DBGET
integrated database retrieval system
