KEGG   Mesorhizobium opportunistum: Mesop_0815Help
Entry
Mesop_0815        CDS       T01542                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mop  Mesorhizobium opportunistum
Pathway
mop03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Mesop_0815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mop03400]
    Mesop_0815
Enzymes [BR:mop01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mesop_0815
DNA repair and recombination proteins [BR:mop03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Mesop_0815
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEH85308
UniProt: F7Y8Z8
LinkDB All DBs
Position
865127..867688
Genome map
AA seq 853 aa AA seqDB search
MAGLEQYHSKRDFKKTSEPAGKVARGKKGEVGGGLFVIQKHAATRLHYDFRLEHDGVLWS
WAVTRGPSLDPHEKRLAVHVEDHPIDYAGFEGTIPKGEYGGGSVIVWDEGTWVPETDPAK
AMKKGHINFELKGHKLHGSWHLVRLRPRPGEKRDNWLLIKSDDAAARPGEDILEEAPQSV
KSGLTIEEVGAGKAARGEKPKVWHSNKPAAGKAKAAGRKLDFVEPQLATLEREAPSGEDW
LHEVKFDGYRMQAQIAGTEVRLLTRAGLDWTEKFGGEIVAELARLKCSDAIIDGEVVVLA
DSGVSSFSLLQQDLSAKRTNRFIYYVFDLMRLDGKDLRREPLVERKQALQELLGKPSENA
AVRFSDHFTEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPSWVKSKCTARQEFVIGGY
LPSDKTGRGLRSLLVGYYEGGSLHYAGRVGTGFSTRGANDLKKKLDELKANTSPFDAAVP
KGKGLVWVKPELVGEVEFRSWTSERIIRHASFQGLREDKPAEEVVQEKPRAATPKEPGGK
TSGGKEPGGKSPAKAKSARSGAGKPAGAMTTTVKLSHPDKLLWPDEKISKQGLLDHYAQV
WPRMERFVINRPLSLVRAPDGVGGQRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDG
IAALVQYGVVEVHIWGSTVDEIEKPDQIIFDLDPDEGVDVKKVREAALDIRGKLDELSLP
NFVKTSGGKGYHVLVPLKPSADWDEVKNFAHDFARALEQAAPDRYTATLSKKARTGKIFV
DYLRNGRGATTVAPYSSRAKKGATVSMPVTWAEIEAGLAPNAFPIGDKTTAKQLKEADPW
KEFFKVAKVLKRG
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atggccggactcgaacagtatcattccaagcgcgacttcaagaagacgtccgaaccggcc
ggcaaggtcgcgcgcggcaagaagggcgaggttggtggcggtctcttcgtcatccagaag
catgccgcgaccagactgcactacgacttccgcctcgagcatgacggggtgctgtggagc
tgggcggtgacgcgcggcccgagcctcgacccgcacgaaaagcggctcgccgtccatgtc
gaggaccacccgatcgactatgccgggttcgaaggcaccattcccaagggcgaatatggc
ggcggctccgtcatcgtctgggacgaggggacatgggttcccgagaccgacccggccaag
gcgatgaagaagggccatatcaacttcgagctcaagggccacaagctgcatggctcatgg
catctggtgcggctgaggccgcgcccgggggagaagcgcgacaactggctgctgatcaag
tcggacgatgcggcggcgcgtccgggcgaggatatcctcgaggaggcgccgcaatcggtg
aagtcgggcctgacgatcgaggaggtcggcgcgggcaaggccgccaggggcgagaaaccg
aaagtctggcattccaacaagccggccgccggcaaggcgaaggccgcgggccggaaactc
gactttgtcgaaccgcagcttgccacgctggaacgggaggctccgtcgggcgaggactgg
ctgcacgaggtgaagttcgacggctatcgcatgcaggcacagatcgccggcacggaggtg
cggctcttgacccgcgccggcctcgactggacggagaaattcggcggcgagatcgttgcc
gaactcgctcgcctgaagtgcagcgacgccatcatcgacggcgaggtcgtcgtgctggcc
gacagcggtgtctcgtccttctcattgctgcagcaggatctgtcggcaaagcggacaaac
cgcttcatctactatgtcttcgacctgatgcgcctcgacggcaaggacctgcgccgcgag
ccgctggtcgagcgcaagcaagccctgcaggaactgctcggcaagccatccgagaacgcg
gcggtgcgtttctccgaccatttcaccgagcccggcaagatcatgctggagcatgcctgc
cgcatgggactggagggcgtcgtctccaaacgcgccgacgcgccctatcgcagcgggcgc
ggccctagctgggtgaagtcgaaatgcacggcgcggcaggaattcgtcatcggcggctat
ttgccgtcggacaagaccgggcgcgggctgcgctcgctgctggtcggttattacgagggc
ggcagcctacactatgccggccgcgtcggcaccggcttctccaccaggggtgccaacgat
ctgaagaagaaactcgatgagctgaaggcgaatacctcgccgttcgacgcagccgttccc
aagggcaaggggctggtctgggtcaaacccgagcttgtcggcgaagtggagttccgcagc
tggacatcggagcgtataatacgccatgcctcgttccaggggctgcgcgaggacaagccg
gcggaggaagtcgtgcaggaaaagcccagggcggcgacacccaaggaaccagggggcaag
acatcagggggcaaggaaccaggaggcaagagcccagccaaggcgaaatccgcgcgaagc
ggcgctggcaaacctgccggggcgatgacaaccacggtaaaactctcccatcccgacaag
ctgctgtggcccgacgaaaaaatctccaagcagggcctgcttgatcactacgcgcaggtt
tggccgcgcatggagcgcttcgtgatcaaccggccgctaagcctggtgcgggcgcccgat
ggcgtcggcggccagcgctttttccagaagcacgcctcggccgggatgagcgacaagata
gcccggatgaaggacccgacggacggcgaggagatcctgttcatccgggatttcgacggc
atcgccgcgctggtccagtacggcgttgtcgaagttcatatctggggctctaccgtcgac
gagatcgaaaagcccgaccagatcatcttcgatctcgatcccgacgaaggtgtcgacgtg
aagaaggtgcgcgaggcggctctagacatcaggggcaagctcgacgagctgtcgctgccg
aacttcgtcaagacatcgggcggcaagggctatcatgtgctggtgccgctgaagccctcg
gcggactgggacgaggtcaagaatttcgcccatgatttcgccagggcgctcgagcaggcc
gcccccgaccgttatacggcgacactgtcgaaaaaggcgcgcaccgggaaaatcttcgtc
gactatctgcgcaatggcaggggcgccacaacagtcgcgccctattcctcgcgcgccaag
aagggcgccaccgtgtcgatgccggtgacctgggccgaaatcgaggccggactggcgccc
aacgccttcccgatcggcgacaagacgacggcgaagcagttgaaggaagccgacccgtgg
aaggaatttttcaaggtggcgaaggtgttgaagcggggatag

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