KEGG   Methylobacterium oryzae: MOC_4216Help
Entry
MOC_4216          CDS       T03299                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mor  Methylobacterium oryzae
Pathway
mor03030  DNA replication
mor03410  Base excision repair
mor03420  Nucleotide excision repair
mor03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mor00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    MOC_4216
   03410 Base excision repair
    MOC_4216
   03420 Nucleotide excision repair
    MOC_4216
   03430 Mismatch repair
    MOC_4216
Enzymes [BR:mor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MOC_4216
    6.5.1.6  DNA ligase (ATP or NAD+)
     MOC_4216
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MOC_4216
DNA replication proteins [BR:mor03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MOC_4216
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MOC_4216
DNA repair and recombination proteins [BR:mor03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MOC_4216
   NER (nucleotide excision repair)
    Other NER factors
     MOC_4216
   MMR (mismatch exicision repair)
    Other MMR factors
     MOC_4216
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: AIQ91971
UniProt: A0A089NVL2
LinkDB All DBs
Position
complement(4234102..4235835)
Genome map
AA seq 577 aa AA seqDB search
MNAFAHLLDRLAYEPRRNAKLRMLQDYFSRTPDPERGYALGAMTGTLSFREAKPALIRGL
VEERIDPVLFRLSHNYVGDLAETTALIWPVPSLSPPAEAGGDGAAGIGHNNPPPPSLAEV
VETLSTIPKRELSRHLAGWLDALDETGRWALLKLVTGNLRVGVSARLAKTAVGALGGHEA
DAVEEVWHGLTPPFATLFAWVEGRAERPETLNPAPFRPPMLSHPIEEEADLEKLEPEAFS
AEWKWDGIRVQLVGGPDRAGQQVGKVYSRTGEDITGAFPDLAEAITFTGAIDGELLILRE
RRVQSFNVLQQRLNRKAVTAKLLEEFPAHVRAYDLLTLAGEDLRAEPFEARREKLEALVT
RLDHARIDISPRVPFADWAALAAARADPASVGAGEDADAIEGVMLKRRNSPYLPGRPKGP
WWKWKREPHIVDAVMMYAQRGHGKRSSFYSDYTFGVWRAAPEGGDELVPVGKAYHGFTDA
ELAKLDRYVRNNTTKRFGPVREVAHGRDAGLVLEIAFEGVQRSTRHKSGVAMRFPRVSRI
RWDKPPAEADRIDVLERILARGEREIAPGATLMEETG
NT seq 1734 nt NT seq  +upstreamnt  +downstreamnt
gtgaacgcattcgcccacctcctcgaccgcctcgcctacgagccgcgccgcaacgccaag
ttgcggatgctgcaggactatttttcgcgcacccccgatcctgaacgcggctacgcgctc
ggtgccatgaccggcacgctgagcttccgcgaggccaagccggcgctgatccgcggactc
gtcgaggagcggatcgacccggtcctgttccggctgtcgcacaactacgtcggggatctc
gccgagacgacggcgctgatctggcccgtcccatctctctccccccccgcagaggcggga
ggggatggggccgccgggatcggccacaacaacccgccgccaccgagtctggccgaagtc
gtcgagacgctcagcacgatccccaagcgcgagctctcccgtcacctcgccggctggctc
gatgccctcgacgagaccgggcgctgggcgctcctgaagctcgtcaccggcaacctgcgg
gtcggcgtctcggcgcggctcgccaagacggccgtcggcgccttgggcggccacgaggcc
gatgccgtggaggaggtctggcacgggctgaccccgcccttcgcgaccctgttcgcctgg
gtcgagggccgggccgagcggcccgagaccctgaatcccgccccgttccggccgccgatg
ctgtcgcacccgatcgaggaggaggccgacctcgagaagctggagcccgaggccttctcg
gccgagtggaagtgggacggcatccgcgtccagctcgtcggcggccccgaccgggcgggt
cagcaagtcggaaaggtctattcccgcaccggcgaggacatcaccggggcgttcccggat
ctcgccgaggccatcaccttcacgggggcgatcgacggcgaattgctgatcctgcgcgag
cggcgcgtgcagagcttcaatgtcctccagcagcgcctgaaccggaaggcggtgacggcc
aagctcctggaggagtttcccgcccatgtccgggcctacgacctcctcaccctcgcgggc
gaggacctgcgggccgaacccttcgaggcccgtcgggagaagctggaggcgctggtcacc
cgcctcgaccacgcgcggatcgacatctcgccccgcgtgcccttcgcggattgggcggcg
ctggcagccgcccgcgcggatccggcctcggtgggggcgggcgaggatgccgacgccatc
gagggcgtgatgctcaagcgccggaacagcccctacctgccgggccgtcccaagggaccg
tggtggaagtggaagcgcgagccccacatcgtcgacgccgtgatgatgtacgcccagcgc
gggcacggaaagcgctcgtccttctactcggactacacgttcggggtctggcgggcggcg
cccgagggcggcgacgagctggtgccggtgggcaaggcctatcacggcttcaccgacgcg
gaactcgccaagctcgaccgctacgtccggaacaacaccaccaagcgcttcggcccggtg
cgcgaggtcgcccatggacgcgacgccgggctggtgctggagatcgccttcgagggcgtc
cagcgttcgacccggcacaaatcgggggtggcgatgcgcttcccccgggtcagccgcatc
cggtgggacaagccgcccgccgaggccgaccggatcgacgtgctggaacggatcctcgct
cgcggcgagcgcgagatcgcgccgggggcgaccctgatggaggagaccggatga

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