Candidatus Methylomirabilis oxygeniifera: DAMO_0532
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Entry
DAMO_0532 CDS
T02155
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Pathway
mox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DAMO_0532 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mox03021
]
DAMO_0532 (rpoB)
03400 DNA repair and recombination proteins [BR:
mox03400
]
DAMO_0532 (rpoB)
Enzymes [BR:
mox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DAMO_0532 (rpoB)
Transcription machinery [BR:
mox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DAMO_0532 (rpoB)
DNA repair and recombination proteins [BR:
mox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DAMO_0532 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CBE67608
UniProt:
D5MK25
LinkDB
All DBs
Position
463375..467391
Genome browser
AA seq
1338 aa
AA seq
DB search
MALVKKSVAAERWNFSKIKEVISIPNLIEIQRRSFDQFLQMKVPPHAREEIGLQGAFASI
FPIYNYDQSASLDFVKYEFGAPKYRAEESLEKGMTYSVPLKVTLRLMVWDKPVGSEAGSI
RDIKEQEVYLGEMPLMTPQGTFIINGTERVVVSQLHRSPGVFFDHDSGKTHPSGKILYSA
RLIPYRGSWLEFEFDANDVLYVRVDRRRRFLASILLRAIGYGSNEEILNLFYERDMLRIE
KGKEILIHVGSRGATSFRASKDIPDPQTKQLILGTAKRITKTAQKRLQALKITEISLYKE
DLIGRIAAADIVNTASGEVILECAQEITAEALERMLSSGTASFAVLASLDGRETFEIRES
IIRDSTRSEKDALTEMYRRMRPGDPPNEEATKAFLESIFFNPKRYDLSKVGRLKINRKLG
LDVPLEVHALMCRRYRPSGMETRIGQIDDVVEAIRYLLRLKHGEAGTSVDDIDHLGNRRV
RSAGELLEEQFRIGLARMERAVRERMSTQELETLMPHDLVNAKPVTAALKEFFGSSQLSQ
FMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRMCPIETPEGPNVGLIA
SLSTYARVNDFGFIETPYRKVRDGVVTDEIEYLTADEEEKYTIAQANAELDGRGRFTSDR
ISARTGGNFVTVPPMNVEYMDVAPKQLVGVSTSLVPFLEHDDANRALMGANMQRQAVPLL
RPEAPVVGTGMEYPAARDSGTVVTARRGGIVESVTADRIIVRASDGKGEEGEDDTGVDIY
SLVKFRRSNQNTCLTQKPIVSKGERITRGQVIADGPATQNGELALGQNVMVAFMPWGGYN
FEDAILISERLVKDDRYTSIHIEEFEIEARETKLGKEEITRDTPNVGEDALKDLDESGIV
RIGAEVKPGDILVGKVTPKGETVLTPEERLLRAIFGEKAEDVRDASLYVPPGICGTVVDV
KVFSRKGVEKDERAKSIEDEEVSRLRKDFEDEISIIAADRDRKLRSLLDGIDVSREIRSR
ITRKIVVSKGKTLTGEMLDKLSHEQLVDLAGRLDEELGQKASRIGDAADNQVHVLQTLLE
ERISRATRGDELAPGVFKMVKVYVAMKRKLSVGDKMAGRHGNKGVIAKVLPEEDMPYLPD
GTPVEVVLNPLGVPSRMNVGQILETHLGWAAGALGLRVASPVFDGAKEQEIKVWLKRAKL
PVSGKTVLYDGRTGKPFHQEVTVGYIYLMKLAHLVDDKIHARSIGPYSLITQQPLGGKAQ
FGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRTKMYESIVRGDCTLDPGLPESFN
VLVKELQSLALDVELKKE
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgtgaaaaagagcgtggctgctgagcgctggaatttcagcaagatcaaagag
gtgatctctatccccaatctgattgagatccagcggcggtccttcgatcaatttttacaa
atgaaggttccgccgcacgcacgcgaggagatcggtcttcagggggccttcgccagcatc
tttccgatctataactacgaccagtcggcgtcgcttgattttgtgaagtacgagttcggg
gcgccaaagtaccgggcagaggaatcgctggagaaggggatgacgtactccgtcccgctc
aaggtgacccttcgcttgatggtgtgggataagccggtcggctccgaggccggcagtatc
agggacattaaagagcaggaggtctacctgggcgaaatgcctttgatgacgcctcagggc
acctttatcattaatggaacggagcgggtggtggtcagccaattgcaccgctctccaggc
gtcttttttgatcatgacagcggtaagactcacccgagcggtaagatcctgtactccgct
cgtcttatcccgtatcgcggttcctggctggaattcgaattcgatgcgaatgacgtactg
tatgtccgggtagaccgaaggcgaaggtttctggcctcgatcctgctacgagccatcggc
tatgggagtaatgaggagatcctgaaccttttctacgagcgggatatgttacgcatcgag
aaggggaaggaaatcctgattcatgtgggttcacgtggcgcgaccagttttcgggcgagt
aaggatattcccgatccccaaactaagcaactgatccttgggacggctaagcgcatcacg
aagacggctcagaagcgactccaggcactgaagatcacggagatatcgctgtataaagag
gatctcatcggacgaattgcagccgctgatattgtgaatacggcaagcggtgaggtcatc
cttgaatgtgcgcaggagattacggcagaagcgctggagcgaatgctgagcagcggaacg
gccagcttcgccgtactggccagcctggacggtcgggaaacgtttgagatccgggagagc
atcattcgcgactcgacccgctccgagaaggatgccttgaccgagatgtaccggagaatg
cgacccggtgatccgcccaatgaggaagccaccaaggcattcctcgagtccatcttcttt
aatccaaagcgctatgacctgtccaaggtcggacgcctgaagatcaatcgcaagcttggc
ctcgacgtaccccttgaggtgcatgccctcatgtgccgtcgatatcgaccgagcggtatg
gagacacggataggtcagatagacgacgtcgtagaggctatccgatacctcctcaggctg
aagcacggagaagccgggacctccgtcgatgatatcgaccatctgggcaatcgtcgagtc
cgatcggccggagaactcctggaggaacagtttcggatcggattagctcgaatggaacgg
gcggttcgagagcgaatgagtacacaggagttggagaccctgatgccgcacgatctggtg
aatgccaagccggtgacggcggcgctgaaggagtttttcggcagctcccagctttctcag
tttatggatcagaccaacccgctggccgagttgactcacaagcggcggctgtcggcctta
ggccctggagggctgtctcgggagcgggcggggtttgaggtccgggacgtacacccgact
cactatggtcggatgtgtcctatcgaaacgccggagggtcctaacgtcggtcttattgcc
agtctgtccacctatgcccgcgtgaatgatttcggctttatcgagaccccgtatcgcaag
gttcgggatggtgttgtgaccgacgagatcgagtatctgaccgccgacgaagaggagaag
tatacgatcgcgcaggccaacgcggagttggacggacggggtcggttcacctcagatcga
atctcggcgcgaaccggcggcaacttcgtcacggttcccccgatgaatgttgagtacatg
gatgttgccccgaagcaactggttggggtgtctacgtcgctggtcccgttcctcgaacac
gatgacgccaatcgcgccctgatgggcgccaacatgcaacgccaagcggtccctctccta
cggccggaagcccccgtagtcggcaccggaatggaatatcccgcggcgcgggattccggg
accgttgtaacggcccggcgtggcgggatcgtcgaatcggtgaccgccgaccggatcatt
gtccgcgcttcggacggcaaaggcgaagagggcgaagacgatacgggggtggacatctac
tccctggtgaagtttcgtcgcagcaaccagaatacctgcctcacacagaagccgattgtg
agcaaaggggagcggatcacgaggggtcaggttattgccgacgggccggcgacgcagaac
ggcgaactggcgctcggacaaaacgtgatggtcgcgttcatgccatggggtgggtataac
tttgaggacgcgattctgatcagcgagcggttggtgaaggatgatcgctatacctctatt
cacatcgaggagttcgagatcgaggcgcgtgagaccaaactgggaaaagaggagatcacg
cgcgataccccgaatgtgggcgaggatgcgctcaaagatctcgacgaaagcgggatcgtc
cggatcggagccgaggtaaagccaggggatatcctggtggggaaggtgactcccaaaggt
gaaaccgtactgactccggaagagcgactgctgcgtgccatctttggcgagaaggccgag
gacgtgcgggatgcctcgctgtatgttccgccagggatctgcggcaccgtcgtcgacgtc
aaggtcttctcgcgaaaaggggttgagaaggatgagcgggccaagtcgattgaagacgaa
gaggtcagtcgactccgcaaggacttcgaagatgagattagtatcattgctgcggatcgg
gataggaagctgcgttccctcctcgatggtatagacgttagcagagagatccggagcagg
attacgcgtaagatcgtggtttcaaaagggaagacattaaccggcgagatgctggataag
ctgtcccatgagcagttagtagatctcgccgggcgattggacgaagagttgggtcagaaa
gcgagcagaatcggcgacgcagcggataatcaggtccacgtcctgcagacgctcctggag
gagcgaatcagcagagcaacccgaggggatgagcttgctcctggggtctttaagatggtg
aaggtctacgtggccatgaaacgaaagctctctgtcggtgataagatggccggccgacat
gggaacaagggtgtgatcgcgaaggttctgcctgaggaagatatgccttacctacctgac
gggacacccgttgaggtagtcttgaatccgctgggcgtgccttcccgaatgaacgtcggt
cagattctggagacccacctcggctgggcggcgggagctctggggctgcgggtcgcctcg
ccggtctttgatggggccaaagagcaagagattaaggtctggctcaagcgagccaagctc
ccagtttcagggaagaccgttctctacgacggacgtaccggtaagccgttccaccaggag
gtgacggtcggctatatctaccttatgaagctggcccatcttgtagatgacaagattcac
gctcgatccattgggccctactcgttgattactcagcaacctctggggggcaaggcccaa
ttcggtggacagcgattcggcgagatggaggtgtgggcgttggaggcgtatggggccgcg
cataccctgcaagagattctgaccgtaaagtcggatgatgtcgtcggacgaaccaagatg
tatgagtcgattgttcgaggcgactgtacgctcgatccggggcttcctgaatcgttcaat
gttctggttaaagagctgcaaagtttggcgctggatgttgagctgaagaaggagtag
DBGET
integrated database retrieval system
