Mus pahari (shrew mouse): 110317152
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Entry
110317152 CDS
T05929
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110317152 (Vps13a)
Membrane trafficking [BR:
mpah04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
110317152 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_mid_rpt
VPS13_ext_chorein
VPS13_DH-like
VPS13_VAB
Chorein_N
VPS13_C
ATG2-VPS13_C
Motif
Other DBs
NCBI-GeneID:
110317152
NCBI-ProteinID:
XP_021047221
Ensembl:
MGP_PahariEiJ_G0014292
LinkDB
All DBs
Position
1:complement(128598939..128796263)
Genome browser
AA seq
3167 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDESQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVG
HIGSLKLKIPWKNLYTQPVEAVLEEIFLLIVPSSRIKYDPIKEEKQLMETKQRELKRIEE
AKQKVFDKEKPQEEKQDTFTEKLITQIIQNLQVQISNIHVRYEDDITNGDKPLSFGISLQ
NISLQTTDQYWIPCLHDATEKLVRKLIRLDNLFAYWNVNSEMFYLNDYDESLKALKNGIV
NENIVPEGYDFVFRPISASAKLQMNRRSDFDFSDPKINLAIDLHTIAIELNKPQYFSLME
LLESVDMMTQNLPYRKFKPSVPLHLHAREWWAYAIHSILEVNVCPSLRMWSWEHIRNHRY
KMKRYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKEG
VKDPEDNAGWFGWLWTWSGSNANQQQDVKPGILEEMLTPEEKSLLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSVALRENHQKPELLNVVVEGLSTSVVQRPGAQAIKFETKIDSFH
ITGLPDDFKKPHLLSSLDDTSLFQITFEINPLNETVAQRCTIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLAQLTSVTLTKLEEFRAKTATGLLYVIETKKVLDLRINVKASYVIVPQYG
NFSPTSNLLLLDLGHLKVTSKRRSLLADVKPSETSREDIMHRAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILIPMHVNVELSKAMVFMDIKMPKFKISGKLPLVSLRISDKKL
QGIMELLGSIPKPAPVTDVSAPARSFQIQASTLPVSHISQKLIPLLEQPVTEDDSEEEFF
DAPCSPLEECAQVSCRDKCTQQKKLQKKDCLMNFIQLRMRFEVAEVSIQFYHLVGDCELP
VLEMGALGLGTEVEIRTFDLKGSAFLKELWLKCPEYLDENKKPVYLITTLDNTMEDLLTL
EFMKVEKNAPNLNSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPELREKSASV
SAAEPEDKGDIIKKPALKLPTNEDIITLQLLAELSCLQIFIQDQKQNISEIKIEGLDSEM
IMKPLVTEINAKLRNIIVLDSDKMAIYKKALYITGKEVFSFKMISYMDATAGYAYTDMSV
VDIRVHLTVGCIEVVFITKFLYSILAFINNFQAVKDALAEATVQAAEMAADGVKELARKS
SRFALDVNIKAPVVLIPQSPVSRNVFVADFGLITMKNIFVTVTETQSNIPPVIDLITIKL
SKMRLYRSQFMNDTYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNIKAQLKPMEFILS
QEDLTTVFQTLHGNIRYGHNLNAPSSANKDPETLTSGVTSTPNHSTATVVTAAVVEVHPQ
ASQVHTTLNVSFRTDYLTMALYSPGPDQASFTDVRDPSLELAEFKLENIISSLKIYTDGS
TVFSFSVKNCILDDKRSHVMKATPRMIGLTVGFDKKDMVDIKYRKIKNVVVTDAVVQEMY
VCASVEFLMTVAHIFFDAYMTSMALETSVQTWTTREAPAQELGKWEMNILIKNPEIVFVA
DMTRNDAPALVITTQCEICCKGEPTSNTVTAAIKDLQVRACPFLPVKRKGKVTTVLQPCD
LFYQATQLGRDPQMIDISVKSLTLKVSPVIINTIITITSALYTTKETVPEENTSNIAHLW
DKKDTKNLKMWFLEESNETEKVVPTNEVIPGGETLNLHIDSIFIVLEAGIGHRTVPMLLA
KSCFSGESKNWRTLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQSDDFRPWNLGIKMK
KKAKEAIVESDSEEENYKVPEYKTAISFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGS
SSVFLRDLAPFMILNSLGLTVSISPSDSFNVLNVPLAKSYELKHDESLSMDYVRTKDSDH
FNAMTSLSSKLFFILLTPANHSVADKIPLTKVGRRLYTVRHRESGVERSIICQIDTVEGS
KKVTIRSPVQIKNHFSIPISIFEGDTLLGIASPENEFNIPLASYRSSLSLMPEGQDYQLC
EGIDFEEVIKYDGQLLKKKCRSTNPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVMHL
WPPILIRNLLPYKIAYYIEGIENTVFTLSEGHSSQIYNVEMDQAKLHLKLLDYLNHDWKS
EFHIRSNQQDINFINFTCLTEMEKSDLDIAIHMTYNTGQTVVAFHSPYWMVNKTNRMLQY
KADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKG
LKMEYQVGVTINLSSFNITRIVTFIPFYMIKNKSKYHISVAEEGSDKWLSLDLEQSIPFW
PENASNILLIQVERSEGPPKRIYFNKQDSCILLRLNNELGGIIAEVNLAEHSTVITFSDY
HDGAATFLLINHTKSDPVQYNQSSLGEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYG
EVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPKVFQVTYESEKAELAELEVVLA
LQDVGISLVNNYTKQEVAYIGITSSDVVWEAKPKKKARWKPMSVKHTEKLEKEFREYTES
SPLEDKVVELDNNIPVRLTPSGNDMKILQPHVIAVRRNYLPALKVEYNTSAHQSSFRIQI
YRIQIQNQIHGAIFPFVFYPIKPPRSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVL
IQEMDLSLDLGFVYALADLVTKAEVTEKTEVEYFHKDIEAFEQEYEVVSSVDQSQVNLFE
YFHISPIKLHLSVSLSSGRDEAKDSEQHGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAF
FELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEP
YQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRRE
AMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVA
RPTGGIIDMASSTFQGIRRATETSEVESLRPPRFFNEDGVIRPYRLRDGSGNQMLQVMEN
GRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRR
LRIEAKERVKSVFHAKEFGKIVNFKTPEDARWILTKLEEAREPSPRL
NT seq
9504 nt
NT seq
+upstream
nt +downstream
nt
atggtattcgagtcggtggtcgtggacgtgttgaaccggttcctgggggactatgtggtg
aacctggacgagtcccagctctccctgggcatttggaaaggagctgtggccctcaagaat
cttgtaattaaagaaaatgcattgcatgaattggatgtaccattcaaagttaaagttggt
catataggtagtcttaaacttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgttttggaggagatttttttactcatagtgccttcttctagaataaagtatgatcct
atcaaagaagaaaagcaactcatggaaacaaaacaacgggaactaaaaagaatagaagaa
gcaaaacagaaagtatttgataaagaaaaacctcaggaggagaaacaggacacttttaca
gaaaagttaattactcaaatcatacagaaccttcaagtgcaaatctccaatatccatgtt
cgttatgaagatgatatcacaaatggagacaaaccactctcttttggtatttcccttcaa
aatatcagccttcagacaactgaccaatactggatcccatgtttacatgatgctactgaa
aagctagttcggaagcttatccgattagataatctctttgcttactggaatgtgaactct
gagatgttttatttgaatgattatgatgaatcactgaaagccttgaaaaatggtattgtg
aatgaaaatattgttccagaaggttatgattttgtttttcgacctatatctgctagtgcc
aaacttcagatgaatcgacgatcagattttgacttttctgaccccaaaataaacctggct
attgatttacataccatagcaattgagttaaataaaccacagtatttcagtctcatggag
cttctcgagtcagttgacatgatgacacaaaacctgccgtacagaaaattcaagcccagt
gtgcctctccacctccatgccagagagtggtgggcttatgctatacatagtattcttgaa
gtaaatgtttgtcccagtttacggatgtggtcgtgggagcatattagaaaccatagatac
aaaatgaaacgatacagagaattttataagaaaaagttaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaactttggatgtttttaatataaccata
gctagacaacaggcagaagttgaggtaaagaaagctggatataaaatttacaaagaagga
gtaaaagatccagaagataatgcaggatggtttggctggttgtggacttggtcaggatca
aatgccaatcaacaacaagatgttaaacctggaattctggaagaaatgttgacacctgaa
gaaaagtcgttactttatgaagcaattggttatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagcatgtctgttgctcta
agagaaaatcaccaaaagccagagctattaaacgttgtagtggaaggacttagtacttct
gttgtgcaaagaccaggagcacaagccataaaatttgaaaccaaaattgattcatttcat
attactggcttaccagatgatttcaaaaaaccccacctactgtcttcattggatgatacg
tcactcttccagattacatttgagataaatcctttaaatgaaactgttgctcagaggtgc
accatagaggctgagcctctagagataatatatgatgcaaggacagtcaatagtatagtg
gagttcttcagacctccgaaagatgtccatctagcccaactcacttcagtaactttgaca
aaacttgaagaatttcgagcaaaaacagcaacaggtttgctgtatgttattgaaacaaag
aaagttcttgatctcagaatcaatgtaaaggcttcatacgttattgtcccacaatatgga
aattttagccctacatcaaatctacttctcttggatcttggtcatttaaaggtgacaagt
aaacgtcgatcactgttagcagatgtgaaacccagtgagaccagccgtgaagatataatg
catagagcatatgactctttcgatattcagcttacaagcatacagttgctctacagcaga
gtgggtgataattggaaagaggcacgaaagctcaatgtatctacacagcatattttgata
cctatgcatgtcaatgtggagctctctaaagccatggttttcatggatatcaagatgccc
aaattcaagatttctggaaagttacctcttgtttcattacgaatctcggataaaaaactg
caaggcattatggagttgttgggaagcattccgaagcctgcacctgtaactgatgtatct
gcccctgccagatcattccagattcaagcatctactttgccagtatcacacatttctcag
aagttaatccctttattggaacagcctgttactgaagatgactcagaggaggaatttttt
gatgcaccatgtagtcccttggaagagtgtgctcaagtatcatgtagagataaatgtact
caacagaaaaaattacaaaagaaagattgtttgatgaattttattcaacttagaatgaga
tttgaagtagcagaggtgtccattcagttctatcaccttgtgggagactgtgaactacct
gtgctggaaatgggtgctttaggattgggaacagaagttgagattagaacatttgacttg
aaaggaagtgcctttttgaaagaattatggttaaaatgtccagaatatttagatgaaaac
aaaaaaccagtttatttgatcacgaccctggataacacaatggaagatttgttaacattg
gaattcatgaaggttgaaaaaaatgcaccaaatttgaatagtacctataacaatgtttta
caacttattaaggtgaatttttcctctttggatattcatttacatactgaagcacttctg
aatacaatgaattatcttaataatattcttccagaattaagggaaaaatctgcctcagtg
tctgctgcagagcctgaagacaaaggggacatcattaaaaaacctgctttaaagctaccc
acgaatgaagatattattaccttgcagcttttggcagaattatcttgtctacagattttt
attcaggatcagaaacaaaacatttctgaaattaaaattgaagggcttgattctgagatg
attatgaaacctttagtcactgaaataaatgcaaagctaaggaatataattgtgttagat
tctgataaaatggctatctacaaaaaggctctttatatcactggaaaagaagttttcagc
ttcaaaatgatttcttacatggatgcaactgctggctatgcatacacagatatgagtgtg
gttgacattcgggttcatttaactgttggttgcattgaagtagtgttcatcacaaaattc
ctgtattctatattggcatttataaataactttcaagcagttaaagatgccttggctgaa
gcaactgttcaagcagcagagatggctgctgatggtgtaaaggagctggctcgaaagagt
tctaggtttgcattggatgttaacatcaaggctccagttgtgctcattccacagtctcca
gtgtctcggaacgtttttgttgctgattttggattaattacaatgaaaaatatatttgtt
accgtaacagagacccagagtaatatcccacctgtaattgatttgataacaataaagttg
agtaaaatgagactatacaggtctcagtttatgaatgatacataccaggaagtgctggac
ctgctactacctttgaacttggaagtgattgttgaacgaaacttatcctgggaatggtac
aaagaagtcccttgttttaatataaaagctcagctaaaacccatggagttcattcttagt
caggaagatttaacaaccgtctttcaaacattgcatggcaatattcggtatggacacaat
ctgaatgctccatcttctgcaaataaagacccagaaacccttaccagtggggtcaccagt
actcccaaccattctacagctactgtggtgactgctgctgtggtggaggtacacccacag
gcttctcaagttcacacaacactgaatgtaagcttccggactgattatctcaccatggca
ctctacagtccggggcctgatcaggcctcctttacagatgttcgtgatccttctctagaa
cttgctgaatttaaattggagaatattataagtagtttaaaaatctatacagatggttct
acagtcttttctttctcagtaaaaaactgtattttagatgataaaaggtcacatgtcatg
aaagccactcctagaatgataggactgactgttggctttgacaagaaggacatggtggat
ataaagtatagaaaaatcaaaaatgttgttgtgactgatgcagttgtccaagaaatgtat
gtttgtgcaagtgtggagtttctgatgactgttgctcatatcttttttgatgcctacatg
actagtatggctttagaaaccagtgttcaaacatggactactagagaagcacctgcacag
gaattagggaagtgggaaatgaatattcttattaaaaacccagagattgtgtttgtagct
gacatgacaagaaatgatgctcctgccctagtcattacgacacagtgtgaaatttgctgc
aaaggtgaacctacaagcaacacagtgactgctgccattaaagatctccaagtcagggca
tgcccgtttcttccagtcaagagaaagggcaaagtcaccactgttttgcagccttgtgac
ttgttttatcaggctactcagttaggtagagatccacaaatgattgatatatcagtaaaa
tctcttacactaaaggtttcaccagttatcataaataccataataactattacttcagca
ctttacacaactaaggaaactgtcccagaagaaaacacttctaatatagcacatttatgg
gacaagaaggatacaaagaatctaaaaatgtggtttcttgaagaatcaaatgaaactgaa
aaagtagttcccacaaatgaagtgataccgggaggagagacactgaacttgcatattgat
tctatttttattgttcttgaggctggaattggtcatagaacagtgccgatgctattggca
aagtcatgcttttcaggggaaagcaaaaactggcggactttaataaatcttcactgtcaa
cttgaactggaagttcactattataatgaaatgtttggtgtttgggaacctttactggaa
cccttagaaattgatcagagtgatgattttagaccttggaatcttggcatcaagatgaaa
aagaaagcaaaagaggccattgttgagtctgacagtgaagaagaaaactacaaagtacca
gaatataagactgccataagtttttattctaaagaccagttaaatattacattatccaag
tgtggccttgtgatgttaaataatttagttgaggcatttactgaagctgctactggatct
tcatctgtcttcctaagagatctagcaccattcatgattttaaattctcttggacttact
gtctctatttcaccaagcgattcttttaacgttctcaacgttcctttggcaaaatcatat
gaactgaaacatgatgagagtttaagtatggattatgtacgaactaaggacagtgatcat
ttcaacgcaatgaccagccttagcagcaagctcttcttcatcctcctgacgcctgctaac
cactctgtcgctgacaagatccctttaacaaaagtgggacgccggctgtacactgtaaga
cacagagaatctggggtcgaaagatctatcatttgtcaaattgacacagttgaaggaagt
aagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaatcccaatttcc
atttttgaaggagatactttattgggaattgcttcacctgaaaatgaatttaatatacca
ttagcatcttaccgatcatccctttccctgatgccagaaggtcaggattaccagctatgt
gaaggaattgactttgaagaagtcataaaatatgatggacagcttctgaagaagaaatgt
agatctacaaacccttctaagaaatcatttgttattaatattgtcccagaaaaggataac
ttgacttccctgtcagtgtattcagaagatggctgggacttaccatatgtaatgcacttg
tggccacctatcctcatccggaatcttctcccctacaaaattgcttattacattgagggc
attgagaacactgtttttactctaagcgaagggcattcatcacagatttataatgtagaa
atggaccaagccaagctacacttaaaattacttgactatcttaatcatgattggaaaagt
gaatttcatatacgatctaatcaacaagacatcaatttcatcaacttcacctgtctcaca
gaaatggaaaagagtgacttggatattgctatccatatgacttacaacactggtcagaca
gttgtggcatttcatagtccatattggatggtcaataaaactaatcggatgttacagtac
aaagcagatggaattcaccgaaagcatccacctaattataaaaaaccagttctcttttcc
tttcagccaaaccacttctttaacaacaataaggttcagcttatggtaactgatagtgag
ctttcagatcaattttcaattgatactgttggtagtcatggagccattaaatgcaaaggt
ctgaaaatggaataccaagttggtgtcactataaatctcagcagttttaacattaccaga
attgtgacatttattcctttttatatgattaaaaacaaaagcaaataccatatatccgta
gcagaagaaggaagtgataaatggctttctcttgacttagagcagagtatccccttttgg
cctgagaatgcctccaatattcttcttattcaagttgagaggagtgaaggtcctccaaaa
agaatatattttaacaagcaagatagttgtattttattgagactgaataatgagcttgga
ggtattattgcagaagttaacttggctgagcactctacagttattacattttcagattac
catgatggagcagctacattcctattaataaatcataccaagagtgaccctgttcagtac
aaccaaagttctctcggtgaaatagaagattctcttcctcctggaaaagcagtctattat
acatgggccgacccagtgggctctagaaagctaaagtggagctgtgggcaaagctatggt
gaagtaacccataaggatgatatgatgacgcccataagtgtggggaaaaaaaccatttat
ttagtgtcgttctttgaaggcctgcagcgtattattttattcactgaagatccaaaagtg
tttcaagtaacatatgaaagtgaaaaggcagaattagcagagctggaagttgtgctggcc
ttacaggatgtcgggatttcccttgtcaataactatacaaagcaagaagtagcctacata
ggcattacaagttctgatgtggtttgggaggcaaaaccgaagaaaaaggccaggtggaag
ccaatgagtgtgaaacacacagagaagctggagaaggagttcagggagtacacagagtct
tcacccttggaggacaaggttgtcgagttggacaataacattccagttcgtttaacacct
agtggcaatgacatgaaaattctgcaaccacatgtgatagctgtccggagaaattacctg
ccagcactaaaagtagaatataacacatctgcacatcagtcgtcattcagaatccagatt
taccgaatacagatccaaaatcagattcatggtgctatttttcctttcgtgttttatcct
attaaacctccaaggtctgtcaccatggactcagcaccaaagccatttacagatgtcagt
attgtcatgagatctgcaggacattcccaaatatcacgcattaagtatttcaaagtattg
attcaagaaatggatctcagtttggatcttggatttgtgtatgccctagcagaccttgtc
acaaaagctgaagtgactgagaaaacagaggtggaatattttcataaggatatagaagca
tttgaacaagaatatgaagtggtttcatcagtagatcaatcacaagtcaatctctttgaa
tattttcatatatctcctatcaagttgcatttgagtgtttccctgagctctggtagagat
gaagcgaaagactcagaacaacatggaggactaattcctgttcattctttaaatcttttg
ctgaagagtattggtgccacccttacagatgtacaagatgtagtatttaagcttgccttt
tttgaactcaactaccagttccatacaacttctgaattgcaatctgaagtaataagacac
tattccaaacaggctattaaacaaatgtatgtactcattcttggacttgatgttttggga
aatccctttggcttaattagagaattttcagaaggagtagaagcttttttttatgaacct
taccagggggccatccagggacctgaagagtttgtggagggaatggcgctaggactgaaa
gcactggttggcggagccgttggtggactagctggtgctgcctctaaaatcaccagtgct
atggctaaaggagtagcggccatgacaatggatgaagactaccagcagaagagaagagaa
gcaatgaataagcagcctgctggccttcgagagggcatcactcgaggaggaaaaggcctt
gtctctggttttgtaagtggcattacagggattgttacaaagccaattaaaggtgctcaa
aaggaaggagcagcgggtttcttcaaaggtgttggaaaaggtttagttggagcagtggca
aggccaacgggtggcatcatagacatggccagcagtacctttcagggaatcagaagagct
acagagacttctgaagtggaaagtttacgacctcccagattctttaacgaagatggagtc
atcagaccttacaggttgcgcgatggttcaggaaatcaaatgttacaagtcatggaaaat
ggaagatttgcaaaatacaagtattttacccatgtcatgatcaataaaacagatatgttc
atgataacaagacgtggcgtgttgttcgtaacaaagggaacatttggacagcttacatgt
gagtggcagtacacttttgatgaattcaccaaagagccattcattgtccatgggagaaga
ctgcgcattgaagccaaggaacgggtgaagtctgtattccatgccaaagaatttggaaaa
atagttaacttcaagactccagaagatgctaggtggatcctcacaaagctggaagaagca
agagaaccatccccgagactgtga
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integrated database retrieval system
